Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02027 ATGGCAATGGCAGCTAGGTACATTGTGCTTTCGTTTGGGATCAGAAGAAACGAGAAGATTGCGTGCTATGTGATGGTGAGGGGTGACAAGGCGATGCAACTTCTGGAGATTGGTTTGAAGGTGAAGGAGTACAAGCTGCTGAGGAGGAACTTCAGCAACACTGCTGGCACGCATCTTAGAGAAAAAGAAAAAGAAAAAGCAACAGCAGGAGTCATCGTCTCTTGTGATCTCCGAACACAACACAAACTAAGCTCAGAATCTTTACTCTCTCTCTCCTCCCACGCCCTTCAAGGACTCTGTCGTGTCGATCTCTCTCTCTGTTTTGTAAATCGTGTCTTCCACCAATCAGGTACGCACATGGCAATGCCAGAAACAAGCCCTGCCACCACTCCCAGTGCTCAAGTTGTTGGCAATGCCTTTGTGGAGCAATATTATCACATTTTGCACCAATCCCCAAACTTGGTGCACAGGTTTTATCAGGATTCAAGTTTCTTAAGCAGATCAGACAGCAATGGTGTGATGACAACTGTGACAACTACAAAGGAAATCAATGAAAAGATTATCTCCCTGAATTATGAAGATTATACAGCAGAAATAAAAACTGCAGATGCTCAGGAGTCATATGAGAAAGGTGTGATAGTTTTAGTAACTGGATGCTTAACTGGGAAGGATAATGTGAGAAGGAAGTTCTCACAGACATTCTTTCTGGCTCCACAAGATAAAGGATATTATGTCTTAAATGACGTCTTTAGGTACATTGAGGAGAATGATACACCACAATTAAATTCTGCCTCGGTAAATGTCATCAATGAAAATGCTGAGGCAGTGCATGTGCCAGAATCAGAGGATATGCATGCTCCTGAACATCTTGTGGAAGACACTTCAACTTTGGCAGAGGGTGAAAACCTTGATAATGGTGCTGAAGTTTATAATCCTCAGGATGAGGACGAAGGATCTGTTATTGATGAAGAGGTTGCTGAACCCCCTACTGATTTAAGTCAGAATGATGTTGTTACAGTTCATGATTCAACTTCTGCTATCCAGGATGATGCACCAAGGAGATCATATGCAGCCATTGTAATGAAAAGTAACACAGCATCCGGTCATGTCTATGTTCCTAGCCGAGCTGCAAGAATGGCATCTGCTAAACCCAGTGAACAATGGCCTAGTACTGCCAAATCAACTCCTGCACCTGAGGCATATATTGGTGCTCCTAGCAGTGATAGTGTACCTGGAAGTAGTGATGTTCATGAAGAAGTTGAAGGTCACTCCATATACATACGGAACTTGCCATTTAATGCAACAGTTGAACAACTTGAAGAGGTCTTTAAGAAATTTGGTCCTATTAAGCATGGTGGCATCCAAGTTAGAAGTAGCAAGCATGGATTCTGTTTTGGCTTTGTTGAATTTGAGGATTTGAGTTCCATGCACAGTGCACTTGAGGCTTCCCCTATCACTGTTGGCGAGCGACAAGCTGTTGTGGAGGAAAAGAGAACTACTACACGAGTCAGCGGTAGTGGGAGAGGGAGGTATCCTTCAGGAAGAGGTGGATTCCGAAGCGACAGTTTCAGGGCGCGTGGGAAATTTGGTGGTGGACGGGGTTATGGCAGAAATGAATTCAGAAACCAAGGAGAATTCTCAGGGCAACCTAGGAGTTCTCAACGGCCAAATCAAAATGGAGGTGGGCGTGGTGGACGTCAAGGTGTGGGGAATCGAAATGCTACACCACCAGCTTCAGCAGCATGA 1746 0.4444 MAMAARYIVLSFGIRRNEKIACYVMVRGDKAMQLLEIGLKVKEYKLLRRNFSNTAGTHLREKEKEKATAGVIVSCDLRTQHKLSSESLLSLSSHALQGLCRVDLSLCFVNRVFHQSGTHMAMPETSPATTPSAQVVGNAFVEQYYHILHQSPNLVHRFYQDSSFLSRSDSNGVMTTVTTTKEINEKIISLNYEDYTAEIKTADAQESYEKGVIVLVTGCLTGKDNVRRKFSQTFFLAPQDKGYYVLNDVFRYIEENDTPQLNSASVNVINENAEAVHVPESEDMHAPEHLVEDTSTLAEGENLDNGAEVYNPQDEDEGSVIDEEVAEPPTDLSQNDVVTVHDSTSAIQDDAPRRSYAAIVMKSNTASGHVYVPSRAARMASAKPSEQWPSTAKSTPAPEAYIGAPSSDSVPGSSDVHEEVEGHSIYIRNLPFNATVEQLEEVFKKFGPIKHGGIQVRSSKHGFCFGFVEFEDLSSMHSALEASPITVGERQAVVEEKRTTTRVSGSGRGRYPSGRGGFRSDSFRARGKFGGGRGYGRNEFRNQGEFSGQPRSSQRPNQNGGGRGGRQGVGNRNATPPASAA 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02027 581 ProSiteProfiles Nuclear transport factor 2 domain profile. 136 252 IPR018222 -
Cca11g02027 581 CDD NTF2 132 254 IPR018222 -
Cca11g02027 581 Gene3D - 2 64 IPR022803 -
Cca11g02027 581 MobiDBLite consensus disorder prediction 542 561 - -
Cca11g02027 581 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 120 570 IPR039539 -
Cca11g02027 581 SUPERFAMILY RL5-like 4 63 IPR022803 -
Cca11g02027 581 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 423 499 IPR000504 GO:0003723
Cca11g02027 581 Gene3D - 413 537 IPR012677 -
Cca11g02027 581 MobiDBLite consensus disorder prediction 496 581 - -
Cca11g02027 581 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 425 482 IPR000504 GO:0003723
Cca11g02027 581 SUPERFAMILY NTF2-like 132 253 IPR032710 -
Cca11g02027 581 SUPERFAMILY RNA-binding domain, RBD 419 527 IPR035979 GO:0003676
Cca11g02027 581 Gene3D - 126 256 - -
Cca11g02027 581 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 120 570 - -
Cca11g02027 581 CDD RRM_SF 425 482 - -
Cca11g02027 581 Pfam Nuclear transport factor 2 (NTF2) domain 136 252 IPR002075 -
Cca11g02027 581 SMART rrm1_1 424 495 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02027 Cca-Chr11 45711351 45724912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02027 5 55 Cytoplasmic Ribosomal Protein Gene Family AT2G42740 84.314 2.55e-21 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02027 K24983 - gmx:100801253 758.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02027 11 45711351 45724912 Cca11g02027 11 45711351 45724912 ECH