Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02022 ATGGCCGCCAAATCAGTCACTCACGACGCCGTTTCCACGCTCATCGCAAACCCTTCCCCCAATTCTTCATCCGTTTTCCCCGAGATCGTCGTTCAAGTCCTCGATCTCAAGCCCAGCGGCAACAGATACATGTTTAATGCTAGTGATGGAAAAATGAAGCTCAGGGCGATTCTTCCCTCGAATGTTTCCTCCGAGGTGCACTCCGGGAATATTCAAAACCTAGGGCTTATTCGTATTCTTGATTACACTGTCAACGATATCCCCAATAAATCAGAGAAATACCTTATTGTCACGAGCTGTGAAACGGTATCTCCCGCGCTTGAAATGGAGATAAAAAGTGAGGGATCCGAGGAAGGTGTAGTGAAGAGTGAAGGTGCTGCTGGGATTCTTCTGAAGCCGAAGCAGGAAGTGGTGACGAAATCTGCTGTTCAGATTCTACACGAGCAACGTGGAAATTCGGCTCCTACGGCAAGGATGGCCATGACGCGTAGGGTGCGTCCTCTTGTTTCGTTGAACCCTTATCAGGGCAATTGGACAATAAAGGTTAGCGTTACGAGCAAAGGGAACATGCGTACCTATAGGAATGCTAGAGGGGAAGGTTGTGTCTTCAATGTCGAATTGACGGACGAGGATGGTACACAGATTCAGGCAACTATGTTTAATGATGCTGCGAGGAAGTTTTATGACAAATTTGTTCTGGGAAAGGTTTACTACATTTCAAAGGGGACTTTGAAAGTTGCTAACAAACAGTTCAAAACTGTGCAAAACGAGTATGAAATGACTCTAAATGAGAATTCTGAGGTGGAAGAGGTAGCTGGCGAAGCGAGTTTTGTTCCAGAAACGAAATTCAACTTTGTCCAGATTGATCAGCTGGGTCCTTTTGTCAACAAGTTAGAACTCGTGGATGTTGTTGGAGTTGTTAAGAATGTGTCTTCAACAATGAGTATTCGTAGGAAGAGTGACAATGAGAGTATTCCAAAGCGTGACATTACTATTGCTGATGAAACGAAGAAGACAGTAGTTGTGTCCTTGTGGAATGATCTTGCAACTAAGATAGGACAAGAGTTGCTAGACATTGCTGACAATTCTCCAATTGTTGCAATCAAATCTCTAAGGGTTGGGGACTTCCAAGGGGTTTCTTTGTCGACTATAAGCAGAAGTGTGGTTCTAATAAATCCGGACATACCTGAAGCAAGGAAGCTCAGATCCTGGTATGACCTTGAGGGTAAGGATGCTGCAATGGACTCTGTTGGCTCTGGTTCAAGTCCAACGTCTAACAATGGATCTAGATCAGTGTACTCTGATCGTGTTTCTCTTTCTCACATAACTTCTGACCCATCATTGGGGGATGTCAAGCCTGCATTTTTCAGTATTAGAGGATATATAAGCTTCATAAAGCCTGATCAGGCGATGTGGTATCGTGCCTGTAAGACGTGCAACAAGAAAGTTACTGAAAGCATTGGTTCCGGATATTGGTGCGAAGGGTGCCAGAAAAACGATGAACAGTGCAGTTTAAGGTATATAATGGTTGCCAAAGTTTCGGATGCAAGTGGTGAAGCTTTTGTCTCCGTCTTTAATGAGGAAGCTGAGAAGATCGTTGGATGCTCTGCTGAGGAGCTAGATGACCTTAGATCACAAGAAGGAGAAGATAATCCTTATCAGCTGAAACTGAAGCAAGCTACTTGGGTTCCACATCTTTTCCGTGTTAGTGTTACTCAGAACGAGTATAATAACGAAAAGCGACAAAGGATAACAGCTCGGGCAGTTGTTCCTGTTGACTTCGCTGCTGAGGCAAGGATTATGCTGGAAGAAATATCGAAGATGAGAGTATAA 1833 0.4419 MAAKSVTHDAVSTLIANPSPNSSSVFPEIVVQVLDLKPSGNRYMFNASDGKMKLRAILPSNVSSEVHSGNIQNLGLIRILDYTVNDIPNKSEKYLIVTSCETVSPALEMEIKSEGSEEGVVKSEGAAGILLKPKQEVVTKSAVQILHEQRGNSAPTARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRTYRNARGEGCVFNVELTDEDGTQIQATMFNDAARKFYDKFVLGKVYYISKGTLKVANKQFKTVQNEYEMTLNENSEVEEVAGEASFVPETKFNFVQIDQLGPFVNKLELVDVVGVVKNVSSTMSIRRKSDNESIPKRDITIADETKKTVVVSLWNDLATKIGQELLDIADNSPIVAIKSLRVGDFQGVSLSTISRSVVLINPDIPEARKLRSWYDLEGKDAAMDSVGSGSSPTSNNGSRSVYSDRVSLSHITSDPSLGDVKPAFFSIRGYISFIKPDQAMWYRACKTCNKKVTESIGSGYWCEGCQKNDEQCSLRYIMVAKVSDASGEAFVSVFNEEAEKIVGCSAEELDDLRSQEGEDNPYQLKLKQATWVPHLFRVSVTQNEYNNEKRQRITARAVVPVDFAAEARIMLEEISKMRV 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02022 610 Pfam Replication protein A OB domain 296 392 IPR031657 -
Cca11g02022 610 Gene3D - 5 113 IPR012340 -
Cca11g02022 610 Gene3D - 278 418 IPR012340 -
Cca11g02022 610 SUPERFAMILY Nucleic acid-binding proteins 6 109 IPR012340 -
Cca11g02022 610 Pfam OB-fold nucleic acid binding domain 179 264 IPR004365 GO:0003676
Cca11g02022 610 CDD RPA1_DBD_B 311 406 - -
Cca11g02022 610 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 6 605 - -
Cca11g02022 610 Gene3D - 419 608 IPR012340 -
Cca11g02022 610 Coils Coil 244 264 - -
Cca11g02022 610 SUPERFAMILY Nucleic acid-binding proteins 283 410 IPR012340 -
Cca11g02022 610 Pfam Replication factor-A C terminal domain 455 599 IPR013955 -
Cca11g02022 610 SUPERFAMILY Nucleic acid-binding proteins 434 608 IPR012340 -
Cca11g02022 610 CDD RPA1_DBD_C 439 607 IPR013955 -
Cca11g02022 610 Pfam Replication factor-A protein 1, N-terminal domain 6 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cca11g02022 610 Gene3D - 164 273 IPR012340 -
Cca11g02022 610 PANTHER REPLICATION FACTOR A 1, RFA1 6 605 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cca11g02022 610 CDD RPA1_DBD_A 167 270 - -
Cca11g02022 610 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 5 607 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cca11g02022 610 SUPERFAMILY Nucleic acid-binding proteins 166 272 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02022 Cca-Chr11 45661512 45664712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02022 5 607 Core DNA Replication Machinery Family AT5G08020 71.192 0.0 927
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02022 K07466 - gmx:100777091 979.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02022 11 45661512 45664712 Cca11g02022 11 45661512 45664712 ECH