Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02018 ATGGCTTTCTTTGGTAGAATTGGGAATTTGTTAAGACATGCTGCGAGCAGGCAGGTTAGCTCGGAATTGCGTTCATCCCCTTCTTTTTTTCAGGCTATACGCTGCATGTCTTCTGCTCCAAGCTCCAAGCTGTTTATAGGAGGTGTTTCGTATTCTACTGATGAGCAAAGTTTGAGGGAAGCTTTTTCAAAATATGGTGAAGTTGTTGATGCAAGGATAATTATGGATCGTGAGACTGGTAGATCCAGAGGATTTGGCTTTATTACATACACTTCAGTTGAGGAGGCTTCGAGTGCCATTCAGGCCTTGGACGGTCAGGACCTTCACGGTCGCCAGATTAAGGTAAATTACGCTAATGAAAGAACTCgtggtggtggtggtggctttggtggttcctatggtgctggagctggtggtggctatggaggtggttatggtggtggcggctacggtggtggtggctatggtagaaatgcagctggtggttatgggggtgctggctatggtggaaatgcagctggcagttatgggggtggtggatatggtggtggCGACTATGGATCAGGTGGCAATTATGGGGACAGTGGCTCTGTCAATAACTACTCTGCTCCAGATAATTTTGGAGCTAGTAGTGCTGGTGGCAGTTACAGTGGGGGTGGGATAAATTATGGGAATGATGGAAACACTTACGCAGGTGGAAGCAGTGGAGGCTATGGTGGTAACAGTGGAAGTTTTGGCGATGCTGGTGGTGTAGGCAATCAGGAAATTTCTGGTGGTTTTGGCAGTAGTGGATATGATGGAAATGCCGTGGATGGTAGTGGCGGTACAGGTACTGGCCCCAGCGGCTTTGCTGATGGATTTGATGGAAGTGGGGGGTTGGAATTTGGCAGCACTGGCCAATTGGACAGCAAAACAAACAGCAACGGAAATGAGGATTTGGGAGATTACAGGGACGACAATGATGATGCTGATGATTTTGCCAAAAGAGCTTGA 993 0.3776 MAFFGRIGNLLRHAASRQVSSELRSSPSFFQAIRCMSSAPSSKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQALDGQDLHGRQIKVNYANERTRGGGGGFGGSYGAGAGGGYGGGYGGGGYGGGGYGRNAAGGYGGAGYGGNAAGSYGGGGYGGGDYGSGGNYGDSGSVNNYSAPDNFGASSAGGSYSGGGINYGNDGNTYAGGSSGGYGGNSGSFGDAGGVGNQEISGGFGSSGYDGNAVDGSGGTGTGPSGFADGFDGSGGLEFGSTGQLDSKTNSNGNEDLGDYRDDNDDADDFAKRA 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02018 330 MobiDBLite consensus disorder prediction 296 310 - -
Cca11g02018 330 CDD RRM_HP0827_like 43 119 - -
Cca11g02018 330 PRINTS Eggshell protein signature 38 54 - -
Cca11g02018 330 PRINTS Eggshell protein signature 127 142 - -
Cca11g02018 330 PRINTS Eggshell protein signature 155 165 - -
Cca11g02018 330 PRINTS Eggshell protein signature 179 197 - -
Cca11g02018 330 SUPERFAMILY RNA-binding domain, RBD 36 128 IPR035979 GO:0003676
Cca11g02018 330 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Cca11g02018 330 MobiDBLite consensus disorder prediction 271 330 - -
Cca11g02018 330 SMART rrm1_1 43 116 IPR000504 GO:0003723
Cca11g02018 330 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Cca11g02018 330 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 252 - -
Cca11g02018 330 Gene3D - 13 140 IPR012677 -
Cca11g02018 330 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02018 Cca-Chr11 45639978 45642535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02018 26 115 Eukaryotic Initiation Factors Gene Family AT1G22760 35.714 8.44e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02018 K12741 - gmx:100799124 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02018 11 45639978 45642535 Cca11g02018 11 45639978 45642535 ECH