Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02013 ATGGCATCGTCGTCGGCGAAGCGATGCCACTACGAAGTGCTGGGCCTCTCCCGCGACTGCGCGCCCGACGAGATCCGGTCGGCGTACCGGCGGCTGGCCCTCCAGCGCCACCCCGACAAGCTGGTGAAATCCGGCCTCTCCCCGGAGGGCGCCACCGCCCAGTTCCAAGAGCTCCAACACGCCTACGAAGTCCTCTCCGACCCAAAGGAGCGCGCTTGGTACGACTCCCACCGCTCCCAGATCCTCTTCTCCGACCCCACCTCCCTCTCCTCCTCCCTCGTCCCCGACCTCTTCTCCTTCTTCTCCAACACCGTCTTCTCCGGTTACTCCGACACCGGCAAGGGCTTCTACAAAGTCTACTCCGAAGTCTTTGACAAAATCCACGCCAACGAGATCACCTTCGCGCGAAAATTGGGCCTCGGCGTTGACGCCGTTAAGAAAGCCCCTCTCATGGGGAACTTGGATTCCCCCTACGCGCAGGTTACTGCGTTTTATAGTTACTGGTTAGGGTTTTCGACGGTGATGGATTTTTGTTGGGTGGATGAGTATGATGCTATGGCGGGGCCGAATCGGAAGTCGCGGAGGCTTATGGAGGAGGAGAATAACAAGGTGAGGAGGAAGGCGAGGAGGGAGTATAATGATACTGTGAGGAGGTTGGGGGATTTTGTGAAGAAGAGGGATAAGAGGGTGATTGATATGAGGGTgaagaggagtgaggagatggagaggaagaaggaggaggagagggagaggaagaggaggttggagagggagaggaaggagagggtcatggcttatgaggagcctgagtgggctagggttgaggatgaggaggtggtggagtgggatgaggaggaggaggagaagaggaatgagaaggagTTTTATTGTGTGCTGTGCGGGAAGAAGTTTAAGAGTGAGAAGCAGTGGAAGAATCATGAGCAGTCCAAGAAGCATAAGGAGAGGGTTGCTGAGTTTAGGGATTCAATTGGGGAGGAGGAGAGGTTGGAGAGTGAGGGAGATGGGGTTGGTGATTTGGAGGAGAGGATAAGGGATGGTCTCAATGTTGAAGAGGGGGGAAGTAGAAATGGGGATGAACTGAATGATGATGGTGACGAGTTTTTTGATGCCCCGCGTGCGAATGAGGGGGAAGAGGCTGGTGTGTCGGTTAATTTtggtgatgatgatgaggaagatgatgaaaatggtgTTCTGGAAGCAATGGTAGCTGGGCACAAGAACAGAAAACCACCTGCTTCATCAGGCAAACCAAAGGCTTCGGTAGCCCCATCGATGCAAATTGAAAATGAGGGCGATGATGAGGAGGAAGATGAAAATGGTGTTCTAGAAGCAATGGTGGCTGGGATCAAGAACAGAAAACCACATGCTTCAACAGGCAAACCAAAGGCTTCTGTAGTCCCTTCTCCGCAAATTGAAAATGAAGATGATGAGGTTGGCTCTATGGAATATAACAACCGGAAGAGTGCAAGAAAGAGACGTGGAGCCAAGAAAGAGAAGGGTAGGAAAAATTGGGAAGAATCTCAGGGGGCTGCTGCTAGTGGCGATGGTGAGAATATAAACACTAATGGAAATGAAAATTCTTATGAAGAGGAGCCTTGTTCCCAACATTTTGTGGAAAATGAGGATAATGGTAAAGAGAATGAGCAGGTTGGTAGAGATAAGAAGATTACAAATCAACCTGCTTATAAAAGAGGAGCCGCCGGCAAGGACACAAAAACGAAAGCAAAAGTTTCATCCAAAGGAAGAAAAGCAAAGGTGTCATCAAAGAATGCTGACAATATTTGTGAGGCTTGTGGAGAGGAGTTTGACTCAAGGAATAAATTACATAAACATCTTGGCGAATCTGGGCATGCGACATTAAAAGGTCGATAA 1893 0.4448 MASSSAKRCHYEVLGLSRDCAPDEIRSAYRRLALQRHPDKLVKSGLSPEGATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPTSLSSSLVPDLFSFFSNTVFSGYSDTGKGFYKVYSEVFDKIHANEITFARKLGLGVDAVKKAPLMGNLDSPYAQVTAFYSYWLGFSTVMDFCWVDEYDAMAGPNRKSRRLMEEENNKVRRKARREYNDTVRRLGDFVKKRDKRVIDMRVKRSEEMERKKEEERERKRRLERERKERVMAYEEPEWARVEDEEVVEWDEEEEEKRNEKEFYCVLCGKKFKSEKQWKNHEQSKKHKERVAEFRDSIGEEERLESEGDGVGDLEERIRDGLNVEEGGSRNGDELNDDGDEFFDAPRANEGEEAGVSVNFGDDDEEDDENGVLEAMVAGHKNRKPPASSGKPKASVAPSMQIENEGDDEEEDENGVLEAMVAGIKNRKPHASTGKPKASVVPSPQIENEDDEVGSMEYNNRKSARKRRGAKKEKGRKNWEESQGAAASGDGENINTNGNENSYEEEPCSQHFVENEDNGKENEQVGRDKKITNQPAYKRGAAGKDTKTKAKVSSKGRKAKVSSKNADNICEACGEEFDSRNKLHKHLGESGHATLKGR 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02013 630 PRINTS DnaJ domain signature 11 29 IPR001623 -
Cca11g02013 630 PRINTS DnaJ domain signature 29 44 IPR001623 -
Cca11g02013 630 PRINTS DnaJ domain signature 50 70 IPR001623 -
Cca11g02013 630 ProSitePatterns Zinc finger C2H2 type domain signature. 297 319 IPR013087 -
Cca11g02013 630 Pfam Zinc-finger double-stranded RNA-binding 295 320 IPR022755 -
Cca11g02013 630 ProSiteProfiles Zinc finger C2H2 type domain profile. 295 324 IPR013087 -
Cca11g02013 630 CDD DnaJ 9 67 IPR001623 -
Cca11g02013 630 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 3 441 IPR044648 -
Cca11g02013 630 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 435 630 IPR044648 -
Cca11g02013 630 Coils Coil 235 265 - -
Cca11g02013 630 MobiDBLite consensus disorder prediction 539 566 - -
Cca11g02013 630 Pfam DnaJ domain 10 75 IPR001623 -
Cca11g02013 630 SMART ZnF_U1_5 292 326 IPR003604 GO:0003676|GO:0008270
Cca11g02013 630 SUPERFAMILY Chaperone J-domain 5 98 IPR036869 -
Cca11g02013 630 MobiDBLite consensus disorder prediction 520 538 - -
Cca11g02013 630 SMART c2h2final6 295 319 IPR013087 -
Cca11g02013 630 SMART c2h2final6 600 624 IPR013087 -
Cca11g02013 630 Gene3D Classic Zinc Finger 282 343 - -
Cca11g02013 630 ProSitePatterns Nt-dnaJ domain signature. 55 74 IPR018253 -
Cca11g02013 630 MobiDBLite consensus disorder prediction 309 597 - -
Cca11g02013 630 MobiDBLite consensus disorder prediction 389 404 - -
Cca11g02013 630 Gene3D DnaJ domain 1 88 IPR036869 -
Cca11g02013 630 ProSiteProfiles Zinc finger C2H2 type domain profile. 600 629 IPR013087 -
Cca11g02013 630 SMART dnaj_3 8 70 IPR001623 -
Cca11g02013 630 ProSitePatterns Zinc finger C2H2 type domain signature. 602 624 IPR013087 -
Cca11g02013 630 MobiDBLite consensus disorder prediction 309 380 - -
Cca11g02013 630 ProSiteProfiles dnaJ domain profile. 9 78 IPR001623 -
Cca11g02013 630 SUPERFAMILY beta-beta-alpha zinc fingers 286 334 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02013 Cca-Chr11 45600528 45604155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02013 1 630 C2H2 Transcription Factor Family AT1G74250 48.012 3.28e-177 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca11g02013 DnaJ 6.6e-21 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02013 K09506 - gmx:100788305 884.789