Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01998 ATGGAGGGAGATCAAATTCAAGAATTCAAACACGCGTGCAAGTTCTGCGGCAAGAGCTTCCCTTGTGGCAGATCCTTGGGGGGTCACATGAGGTCTCATATCACCAACTTGTCACACGAGGAAAACGAGAAAGAGAAACTTCCAACGAGGAAGCTTTCTTCTTCTCTCAACAAAGACAAAGACACAGATTCTGAAGCTGCAGCCAACGCTGCCTATGGTCTCAGAGAGAAGCCAAAGAAGACATGGAGAATCTCAGATTACTCAAGCGAAGAGGCTTTGGTGTATGACAAGTTCTGCAAAGAGTGTGGCAAAGGGTTCCGCTCTTGGAAGGCTTTGTTTGGTCACATGAAATGCCACTCAGAGAAAGAAAGAGTTTCTAACAGCTTGGAAGATCAAGATTCTTGGACTAATGCTAATTCTAGCCACAAGGTGGTTATGGATAGCCAATCTGACAACGAAGGAACTGCTCCAAATAAGAGAAGAAGGTCCAAGAGAAGAACAAGGTACACGGTTGCTGCTACAACTTCTTCGGTTGTGTCTTTTGCCAATCCTTCGTCTTCTCTCTCTGAGGTTGAGCAAGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTTAGTAGGGATGTGAGTCCTTGGAGTGGTCCTCATTCTGTTGCTGAGTCTTCTGACAATAACTCTGCTTACTTCGAAGCTCGATCTTCAGTTCGAACTAATTTGGTTACCAAATTTGATGGCAAGAAGAGCTTCACTCCTAACATAGGAAAACTCATCAAGCAAAGTGATGATAATAACAAGTGGCAGGCTGGCAATTTTGCTTCTGAAAATCCCAACTCAACTGGAGGGAAGAGTTCACAACTTTTGACTACTGCTGATACTACCGCTGCTGCTACGCAAATTCTTGGAAATGGATTTAGAGTGAACAAAAGTGGAGTTTCCAATAAAGAGTATGAAAAGGGAAACAAGTCTGAGCTTGAGTATGTGTCTGCATTGGAGGATTCTGAAGTTGAACATGGGAGGAGCAGAGTCAATGGAACAGAATCAGTTTTTTCAAAGTCAGCTACTACTGGCAACAAGTACAGTTCAATCAAGACAAAGTTCCTCGGTTCTGAATTGAAGTCAAGTAAGAATTGGGTGGACAAGGCTTGTGAAGCTGAATCTAGCAAGAACTCTAATAAGAGAGGCAAGTTTGAGTGTACCACTTGCAACAAAATCTTCCACTCATACCAAGCTCTTGGAGGCCATAGAGCTAGCCACAAGAAGATCAAAGGCTGCTTTGCTTCAAGAAATGAGAGTAGTGAAAACAGCATTGAAACTGATCTCTCTCCTAGTCCAACCACTGAAAACAAGCTCATAAAAAACAGTGACAATGAGTATCTAATGGAAAATGAACATGGAGCTGGCTTTCACAATCAGATGGGAACAGTAACTGAGTCCAAGAAGAGCAAGGGGCATGAGTGTCCAATTTGCCTCAAGGTTTTTGCATCTGGCCAAGCCTTAGGTGGCCATAAGAGATCTCACATGACTGGTGTGTCTGAAAGTAGAAGCTTTCAAATTCAGGAACCAGTGCAAGAAATTAGGGACTTCCTTGATCTTAATCTTCCTGCTGCTACTGAAGAAGAGAGTAATAGCCATGCTGACTCTAACAGACCCTGGTGGATAGTAGAAGACAACCACAAGCAGGAGGCACTGGTAGGCATGATCTCATAG 1707 0.4353 MEGDQIQEFKHACKFCGKSFPCGRSLGGHMRSHITNLSHEENEKEKLPTRKLSSSLNKDKDTDSEAAANAAYGLREKPKKTWRISDYSSEEALVYDKFCKECGKGFRSWKALFGHMKCHSEKERVSNSLEDQDSWTNANSSHKVVMDSQSDNEGTAPNKRRRSKRRTRYTVAATTSSVVSFANPSSSLSEVEQEQEEVAMSLMMLSRDVSPWSGPHSVAESSDNNSAYFEARSSVRTNLVTKFDGKKSFTPNIGKLIKQSDDNNKWQAGNFASENPNSTGGKSSQLLTTADTTAAATQILGNGFRVNKSGVSNKEYEKGNKSELEYVSALEDSEVEHGRSRVNGTESVFSKSATTGNKYSSIKTKFLGSELKSSKNWVDKACEAESSKNSNKRGKFECTTCNKIFHSYQALGGHRASHKKIKGCFASRNESSENSIETDLSPSPTTENKLIKNSDNEYLMENEHGAGFHNQMGTVTESKKSKGHECPICLKVFASGQALGGHKRSHMTGVSESRSFQIQEPVQEIRDFLDLNLPAATEEESNSHADSNRPWWIVEDNHKQEALVGMIS 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01998 568 Pfam C2H2-type zinc finger 11 33 - -
Cca11g01998 568 Pfam C2H2-type zinc finger 99 121 - -
Cca11g01998 568 Pfam C2H2-type zinc finger 484 507 - -
Cca11g01998 568 Pfam C2H2-type zinc finger 396 420 - -
Cca11g01998 568 Gene3D Classic Zinc Finger 393 506 - -
Cca11g01998 568 ProSiteProfiles Zinc finger C2H2 type domain profile. 484 506 IPR013087 -
Cca11g01998 568 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Cca11g01998 568 SUPERFAMILY beta-beta-alpha zinc fingers 8 36 IPR036236 -
Cca11g01998 568 SMART c2h2final6 396 418 IPR013087 -
Cca11g01998 568 SMART c2h2final6 11 33 IPR013087 -
Cca11g01998 568 SMART c2h2final6 484 506 IPR013087 -
Cca11g01998 568 SMART c2h2final6 97 119 IPR013087 -
Cca11g01998 568 ProSitePatterns Zinc finger C2H2 type domain signature. 486 506 IPR013087 -
Cca11g01998 568 MobiDBLite consensus disorder prediction 125 169 - -
Cca11g01998 568 SUPERFAMILY beta-beta-alpha zinc fingers 98 123 IPR036236 -
Cca11g01998 568 MobiDBLite consensus disorder prediction 258 286 - -
Cca11g01998 568 MobiDBLite consensus disorder prediction 37 64 - -
Cca11g01998 568 MobiDBLite consensus disorder prediction 130 153 - -
Cca11g01998 568 ProSitePatterns Zinc finger C2H2 type domain signature. 398 418 IPR013087 -
Cca11g01998 568 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 568 - -
Cca11g01998 568 ProSitePatterns Zinc finger C2H2 type domain signature. 13 33 IPR013087 -
Cca11g01998 568 Gene3D Classic Zinc Finger 2 124 - -
Cca11g01998 568 ProSiteProfiles Zinc finger C2H2 type domain profile. 11 33 IPR013087 -
Cca11g01998 568 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 568 - -
Cca11g01998 568 ProSiteProfiles Zinc finger C2H2 type domain profile. 396 423 IPR013087 -
Cca11g01998 568 SUPERFAMILY beta-beta-alpha zinc fingers 396 506 IPR036236 -
Cca11g01998 568 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01998 Cca-Chr11 45401925 45404458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01998 419 539 C2H2 Transcription Factor Family AT1G26610 46.341 6.41e-20 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca11g01998 zf-C2H2_6 1.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01998 - - gmx:102669916 868.226