Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01988 ATGTCAGAGCAGGAAGCACATTCCTCTGCcttactcttattctttttcttcatccttctttcagGTAAAGTTGTTGTTGGGGGGTCTTTGGACACGGACAAAGAGGTTTTGCTGAAGCTGAAATTGTACCTAGACAACAAAACTCTTGCAGACAGAGGAGGGTACATATATTGGAACACCAATAGCTCCAATCCTTGTGAATGGAAAGGAATCTCATGCAGTGGTACGAGGAGGGTGGTTGGCGTAGACCTTTCTCATAGTGACATTACTGGTGAGATATTCAAGAACTTCTCGCAGCTCACTGAGCTCACACACCTTGATCTTTCTCAGAACACGCTCTTTGGTGAGATTCCGGAGGACTTGAGGCACTGCCGCAAGCTCTTGCATCTCAACCTATCTCATAATATTCTTGATGGGGAGCTTAACTTGACTGGATTGAAAAGCTTGCACACGCTGGACTTGTCAAGTAACAGATTTTATGGGGAGATTGGGGTGAATTTCCCTGCCATTTGTGACAGTTTAGTTACTCTGAATGTCTCGGGTAATAACTTGACTGGTAGGATTGAGAACTGCTTTGATCAATGCGTCAAGTTGCAGTACTTGGATTTGAGCACCAACAATCTGAGTGGAAACATGTGGATGAATTTTGCGAGGCTCAAAGATTTTTCTGTTGCGGAGAATCATCTAAATGGGATCATTCCTTCGGAAGCAATTCCCGGTAATTGTAGCCTTGAAGGACTTGATCTTTCACAAAATGGATTTGTTGGTGAGGCACCTAAGGGGGTTGCTAACTGCAAGAATTTAACCACTCTGAATCTTTCGAGTAACAAGTTTACTGGGGGTATTCCCGTTGAAATAGGATCCATTTCGGGCCTCAAAGCATTGTACCTAGGAAACAACAGCTTTTCAAGAGAAATTCCTGATGCCCTTTTGAATTTGACCAATTTGGTTTTCTTGGATTTGAGCAGAAACAGTTTTGGTGGGGACATACAAGAGATATTTGGGAAATTTAAGCAAGTGAGTTTTCTTTTGTTGCACTCAAATAATTACACTGGAGGATTGATATCCTCTGGAATTCTCAAATTGCCAAACATTTGGAGGTTAGACCTAAGCTACAACAACTTTTCAGGTCCATTACCTGTTGATATCTCTCAAATGTCAAGTCTGAAGTTTCTAATGTTATCCTACAACCAATTCAATGGATCCATTCCACCCCAATTTGGAAACATGACTCAACTGCAAGCACTTGACATTGCCTTCAACAATTTGACTGGGCCTATACCATCAAGCCTTGGAAACTTGAGTTCCCTCTTGTGGTTGATGCTTGCAAACAATTCTTTAAGTGGAGAAATCCCTCCAGAGTTGGGAAACTGTTCAAGCTTGTTATGGTTAAACCTTGCCAACAACAAGCTCTCTGGAAATTTGCCTTCTGAACTGTCCAAAATTGGAAGGAATGCCATGACCACATTTGAATCAAATAGGAGAAACTATCGAATGGTTGCTGGCTCCGGTGAATGTTTAGGAATGAAGAGATGGATACCAGCAGATTACCCACCATTCAGCTTTGTGTATAGCCTCTTAACAAGGAAAACTTGTAGAGACCTTTGGGATAAACTACTCAAAGGATATGGTATTTTCCCGTACTGCACACCTGGCTCTTCCTTGCGCATACAACAAATATCCGGGTATGTTCAGCTAACCTCGAACCAGCTCAGCGGTGAAATCCCTTCAGAGATTGGGACAATGGTGAACTTCAGCATGTTGCACTTGGGGTTCAACAATTTCTCTGGGAAGCTCCCTCCAGAGATGGCAGGTGTCCCCATTGTGGTGCTGAACATCACAAGCAACAAGTTTTCAGGCGAAATCCCCGAAGAAGTTGGCAACATGAAATGCTTGATGAATCTTGACTTGTCATACAACAACTTCTCTGGAACCTTTCCCACAAATTTGAACAAATTGACAGAGCTTAACAAGTTCAACATCTCGTACAACCCCTTAATATCCGGTGTGGTACCATCAACAGGACAGTTTGCCACCTTTGAGAAAGAATCATATTTAGGCAACCCCCTCTTGATCCTGCCCGAGTTTATCGATAACACTACCAATAACAAAAACACCCCCTCTCAGAAAGACCATAAAACCTCCACAAAAGTGTCCATGTTTTTGGTCTTTCTGGTCATAACACTGGTTTTCACGATATTTGGTGTTCTTACAATCATAGTCTGTGTATCCGTGAAAGGTCCATCATCAGAGGAGCCAAGATACCTCTTGAGGGATATGAATATAAAACAGTGGCATGACTCGAGCAGCTCTGGATCCTCACCGTGGATGTCTGACACAGTTAAGGTTATCCGTTTGAACAAGACAGCTTTCACACACGATGACATTCTGAAAGCAACAAGCAGCTTCTCAGAGGAGAGAATAATAGGAAAAGGAGGATTTGGAACAGTGTACAAGGGAGTGTTTTCAGATGGGAGACACGTGGCAGTGAAGAAGCTCCAAAGGGAAGGCTTAGAGGGTGAGAAGGAGTTCAAGGCTGAAATGGAGGTTCTGAGTGGTCATGGATTTGGATGGCCTCATCCAAACCTTGTGACACTCTACGGTTGGTGCCTAAACGGTTCAGAGAAGATACTGATATATGAGTACATAGAGGGTGGAAGCTTGGAGGATGTAGTGACAGATAGGACACGTTTGACATGGAGGAGGAGGCTAGAAGTGGCAACTGATGTGGCACGTGCGTTGGTGTATTTGCACCATGAGTGTTACCCTGCGGTTGTGCACAGAGATGTCAAGGCTAGTAATGTGTTGCTAGACAAGGATGGGAAGGCCAAGGTTACTGATTTTGGGCTTGCAAGAGTGGTTGACGCTGGGGATAGCCACGTGAGTACTATGGTGGCTGGTACTGTGGGCTATGTTGCACCTGAATATGGACACACGTGGCAGGCTACTACCAAGGGTGACGTGTACAGTTTTGGGGTGTTGGTCATGGAGCTGGCAACAGGGAGAAGAGCAGTGGATGGAGGGGAAGAGTGTTTGGTGGAATGGGCCAGGCGTGTTATGGGCTATGGACGACATCACGGGTTGGGCCGTTCTGTACCGGTTTTGCTAATGGGCTCTGGGCTTGTTGGTGGGGCTGAGGAGATGGGGGAGTTGCTGAGGGTTGGGGTGAGGTGCACAGCTGATTCACCTCAGGCTAGGCCCAACATGAAGGAGGTTCTTGCTATGCTGATTAAGATATATAACCCCAAGGGGGACTCGAGTTATGGTTATGGACATATTGTTTAG 3285 0.4444 MSEQEAHSSALLLFFFFILLSGKVVVGGSLDTDKEVLLKLKLYLDNKTLADRGGYIYWNTNSSNPCEWKGISCSGTRRVVGVDLSHSDITGEIFKNFSQLTELTHLDLSQNTLFGEIPEDLRHCRKLLHLNLSHNILDGELNLTGLKSLHTLDLSSNRFYGEIGVNFPAICDSLVTLNVSGNNLTGRIENCFDQCVKLQYLDLSTNNLSGNMWMNFARLKDFSVAENHLNGIIPSEAIPGNCSLEGLDLSQNGFVGEAPKGVANCKNLTTLNLSSNKFTGGIPVEIGSISGLKALYLGNNSFSREIPDALLNLTNLVFLDLSRNSFGGDIQEIFGKFKQVSFLLLHSNNYTGGLISSGILKLPNIWRLDLSYNNFSGPLPVDISQMSSLKFLMLSYNQFNGSIPPQFGNMTQLQALDIAFNNLTGPIPSSLGNLSSLLWLMLANNSLSGEIPPELGNCSSLLWLNLANNKLSGNLPSELSKIGRNAMTTFESNRRNYRMVAGSGECLGMKRWIPADYPPFSFVYSLLTRKTCRDLWDKLLKGYGIFPYCTPGSSLRIQQISGYVQLTSNQLSGEIPSEIGTMVNFSMLHLGFNNFSGKLPPEMAGVPIVVLNITSNKFSGEIPEEVGNMKCLMNLDLSYNNFSGTFPTNLNKLTELNKFNISYNPLISGVVPSTGQFATFEKESYLGNPLLILPEFIDNTTNNKNTPSQKDHKTSTKVSMFLVFLVITLVFTIFGVLTIIVCVSVKGPSSEEPRYLLRDMNIKQWHDSSSSGSSPWMSDTVKVIRLNKTAFTHDDILKATSSFSEERIIGKGGFGTVYKGVFSDGRHVAVKKLQREGLEGEKEFKAEMEVLSGHGFGWPHPNLVTLYGWCLNGSEKILIYEYIEGGSLEDVVTDRTRLTWRRRLEVATDVARALVYLHHECYPAVVHRDVKASNVLLDKDGKAKVTDFGLARVVDAGDSHVSTMVAGTVGYVAPEYGHTWQATTKGDVYSFGVLVMELATGRRAVDGGEECLVEWARRVMGYGRHHGLGRSVPVLLMGSGLVGGAEEMGELLRVGVRCTADSPQARPNMKEVLAMLIKIYNPKGDSSYGYGHIV 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01988 1094 Gene3D Ribonuclease Inhibitor 29 167 IPR032675 -
Cca11g01988 1094 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 1083 - -
Cca11g01988 1094 Gene3D Phosphorylase Kinase; domain 1 768 882 - -
Cca11g01988 1094 Gene3D Ribonuclease Inhibitor 240 331 IPR032675 -
Cca11g01988 1094 Pfam Leucine Rich Repeat 103 124 IPR001611 GO:0005515
Cca11g01988 1094 SUPERFAMILY L domain-like 216 478 - -
Cca11g01988 1094 Gene3D Ribonuclease Inhibitor 168 239 IPR032675 -
Cca11g01988 1094 SMART serkin_6 803 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01988 1094 SUPERFAMILY RNI-like 65 283 - -
Cca11g01988 1094 Pfam Protein kinase domain 804 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01988 1094 ProSitePatterns Protein kinases ATP-binding region signature. 809 832 IPR017441 GO:0005524
Cca11g01988 1094 SMART LRR_typ_2 100 124 IPR003591 -
Cca11g01988 1094 SMART LRR_typ_2 289 313 IPR003591 -
Cca11g01988 1094 SMART LRR_typ_2 386 409 IPR003591 -
Cca11g01988 1094 SMART LRR_typ_2 434 458 IPR003591 -
Cca11g01988 1094 ProSiteProfiles Protein kinase domain profile. 803 1079 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01988 1094 Pfam Leucine rich repeat 412 471 IPR001611 GO:0005515
Cca11g01988 1094 Pfam Leucine rich repeat 148 208 IPR001611 GO:0005515
Cca11g01988 1094 Pfam Leucine rich repeat 267 325 IPR001611 GO:0005515
Cca11g01988 1094 ProSitePatterns Serine/Threonine protein kinases active-site signature. 925 937 IPR008271 GO:0004672|GO:0006468
Cca11g01988 1094 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 1083 - -
Cca11g01988 1094 Gene3D Ribonuclease Inhibitor 332 516 IPR032675 -
Cca11g01988 1094 Gene3D Ribonuclease Inhibitor 553 708 IPR032675 -
Cca11g01988 1094 CDD STKc_IRAK 809 1079 - -
Cca11g01988 1094 Pfam Leucine rich repeat N-terminal domain 31 74 IPR013210 -
Cca11g01988 1094 SUPERFAMILY Protein kinase-like (PK-like) 785 1077 IPR011009 -
Cca11g01988 1094 Gene3D Transferase(Phosphotransferase) domain 1 883 1088 - -
Cca11g01988 1094 SUPERFAMILY L domain-like 563 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01988 Cca-Chr11 45300781 45304910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01988 66 1076 Receptor kinase-like Gene Family AT1G55610 31.907 5.21e-154 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Cca11g01988 Pkinase 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01988 - - gmx:100816573 1893.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01988 11 45300781 45304910 Cca11g01988 11 45300781 45304910 ECH