Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01983 atggggtgCGTGGTTGCGAAGCAGGCGGTGTCAGTGACGCCGGCGATTGAGCACTCGGTTGAGTTGGagaagaacaggaataagaagaagagtgagtcagtgggagcgagtaggagcgagttgggtgagtcagggagAGCGAGTTCCAATGGTGAAAGTGACTCTCTCAGCTTCAGATTGGGGAACCTCAGTAAGTACGTCGAGGGAGAGCAGGCGGCGGCGGGGTGGCCGGCGTGGCTCAGCGCCGTCGCCTGTGAAGCCATTCACGGTTGGGTGCCTCTTCGTGCTGACGCATTTGAGAAACTTGATAAGATTGGGCAGGGTACATATAGTAGTGTTTTCCGAGCAAAGGAGATTGAGACCGGGAAGATAGTGGCTTTGAAGAAGGTTAGGTTTGACAATTTTGAGCCAGAGAGTGTGAGGTTCATGGCACGGGAAATAATGATTCTTAGAAGGCTTGATCATCCAAACATCATTAAACTGGATGGCTTGATTACTTCTAGATTGTCTTGTAGCATATACCTTGTGTTTGAGTACATGGAGCACGACATCACGGGGCTCTTGTCTAGACCAGAAATCAAGTTCAGTGAATCACAGATCAAATGCTACATGAAACAGTTGTTATCTGGTCTTGAGCATTGTCACTCACGGGGTGTAATGCACCGGGACATCAAAGGGTCAAATCTTTTGGTGAATAATGAAGGGATATTGAAGGTGGCAGATTTTGGATTAGCAAATTTCTCCAGTTCTGGGAACAAGCAACCCCTCACTAGTCGTGTTGTCACCTTATGGTACCGTCCTCCAGAACTTTTGCTCGGTTCAACAGATTATGGTCCATCCGTGGATCTCTGGAGCGTTGGCTGTGTATTTGCAGAATTACTAATTGGGAAGCCTATACTTCAGGGGAGAACTGAGGTTGAGCAACTGCACAAAATTTTCAAGCTTTGTGGCTCCCCACCTGATGAATACTGGAAAAAGACCAGACTTCCTCATGCAACATTGTTCAAGCCACAGCAACCATATGATAGTTGCCTCCGAGAGACATTTAAAGATTTTCATGCATCCAGTGTAAATCTTCTACAGACCCTTCTTTCTGTTGAACCAAGTAAACGTGGAACTGCCTCGTCTGCTCTCTCATTGGAGTATTTCAAAACAAAACCTTATGCATGTGATCCATCAAGCTTACCAATATACCCACCTAGCAAGGAGATTGATGCGAAACATGAAGAGGAGTCGAGAAGGAAAAAAATTGGTGGGCGAGTTTGCGGACCAGAATCGAAGAAACCATCAAGAAAGCCACTAGGACTGAGTAAATTAGCCCCAGCAGAGGATTTGACAAGTCAAACTCAAACATCCCAAAAGATTGATGATAAATCTTTCCACACCCTTAAAGAAGAGAACACAAACACATGTGAGGAGGCACCAAAGCAGTCTAGTGTTAAACCAGAAGGTGCTTCCCAGATGAAGAATGCATCTCAAGTAGATATTCCCTTTCCTGGACCATTGCAAGTTTCAAAATCAAGTGGCTTTGCATGGGCAAAAAGGCGCAAAGATGACACTTCAATTAGAACCCACAGTCGGTCTATTTCTAGAGGATATATCTTTAATTCATTAGAAACTTCGACACTGAATTCAAGGAATAATTCTGAATCCAGAAACTATGAAAATAAGGAATTTTTTGGGGCACACACCAACTCTAGGGGCCATGACCTACTTGAAATTTCTAAGCTAGCTATGCAAAATCAATGGAGTAAGTTTGATCGTCCAGATTCATTTGATACTTCTGAGGAGTACCATTCACAAGAACTGTCCATGGCGCTTTATAACAGGCAAGATTCACTATCCAAGAGAAGTAACTTGAGTTACCAAGATCAAGGAGAAAAGGTAGAGTTTTCAGGGCCTCTTCTGTCTCAAATGCACACAGTTGATGAACTCTTGGAAAGACATGAGCGTCACATCCGTCGTACCGTCAGAAGATCATGGTTTCAGAGAGGTAAGAAGCAAGGAAAGTAA 2013 0.4247 MGCVVAKQAVSVTPAIEHSVELEKNRNKKKSESVGASRSELGESGRASSNGESDSLSFRLGNLSKYVEGEQAAAGWPAWLSAVACEAIHGWVPLRADAFEKLDKIGQGTYSSVFRAKEIETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLDGLITSRLSCSIYLVFEYMEHDITGLLSRPEIKFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSSSGNKQPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQQPYDSCLRETFKDFHASSVNLLQTLLSVEPSKRGTASSALSLEYFKTKPYACDPSSLPIYPPSKEIDAKHEEESRRKKIGGRVCGPESKKPSRKPLGLSKLAPAEDLTSQTQTSQKIDDKSFHTLKEENTNTCEEAPKQSSVKPEGASQMKNASQVDIPFPGPLQVSKSSGFAWAKRRKDDTSIRTHSRSISRGYIFNSLETSTLNSRNNSESRNYENKEFFGAHTNSRGHDLLEISKLAMQNQWSKFDRPDSFDTSEEYHSQELSMALYNRQDSLSKRSNLSYQDQGEKVEFSGPLLSQMHTVDELLERHERHIRRTVRRSWFQRGKKQGK 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01983 670 MobiDBLite consensus disorder prediction 21 36 - -
Cca11g01983 670 SMART serkin_6 99 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01983 670 MobiDBLite consensus disorder prediction 442 456 - -
Cca11g01983 670 Pfam Protein kinase domain 99 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01983 670 MobiDBLite consensus disorder prediction 402 427 - -
Cca11g01983 670 MobiDBLite consensus disorder prediction 21 55 - -
Cca11g01983 670 Gene3D Phosphorylase Kinase; domain 1 86 181 - -
Cca11g01983 670 PANTHER CELL DIVISION PROTEIN KINASE 31 663 - -
Cca11g01983 670 CDD STKc_CDK9_like 99 383 - -
Cca11g01983 670 Gene3D Transferase(Phosphotransferase) domain 1 182 422 - -
Cca11g01983 670 ProSitePatterns Protein kinases ATP-binding region signature. 105 128 IPR017441 GO:0005524
Cca11g01983 670 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 31 663 - -
Cca11g01983 670 SUPERFAMILY Protein kinase-like (PK-like) 92 390 IPR011009 -
Cca11g01983 670 MobiDBLite consensus disorder prediction 397 458 - -
Cca11g01983 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Cca11g01983 670 ProSiteProfiles Protein kinase domain profile. 99 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01983 Cca-Chr11 45249146 45255190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01983 91 415 Core Cell Cycle Gene Families AT5G10270 51.613 1.49e-115 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Cca11g01983 Pkinase 1.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01983 - - gmx:100784406 1218.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00618 03 10754785 10762130 Cca11g01983 11 45249146 45255190 ECH
Cca11g01983 11 45249146 45255190 Cca11g01983 11 45249146 45255190 ECH