Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01982 ATGGCGCTGTTCAGAAGGCTATTCTACCGGAAGCCGCCGGATCGGCTTCTGGAGATTTCCGAGAGAGTTTATGTTTTTGATTGCTGCTTCTCCACGGATGTCTTGGAAGAAGATGAATACAGAGTTTATATGGCGGGGATTGTGGCTCAGCTACAGGACCACTTTCCAGATGCTTCTTTCATGGTATTCAACTTTAGAGAAGGGGAGAGACGCAGCTACATCTCAGACATACTTTCTCAGTATGACATGACAGTTATGGAGTACCCTCGGCAATACGAGGGTTGTCCCCTTCTGCCTCTAGAGATGATCCATCACTTCCTTCGATCAAGTGAAAGCTGGTTGTCTTTGGAGGGGCAACAGAATGTGCTTTTGATGCACTGTGAAAGGGGAGGTTGGCCCGTGCTGGCATTTATGCTAGCAGGTCTTCTGTTATTTCGGAAACAGTACAGTGGGGAGCAGAAGACTCTTGAAATGGTCTACAAGCAAGCTCCAAGAGAACTACTACACCTTTTATCTCCTTTGAATCCACAGCCTTCTCATTTTAGATATCTTCAGTATATTTCCAGGAGACATTTGGGTACTGAGTGGCCACCATCGGAAACACCCTTATATTTGGATTGTCTGATTCTTAGAGACCTTCCGTTATTTGATGATGGAAAAGGTTGCAGGCCTGTTGTACGTGTTTATGGTCAGGACCCTTCTATTCCTGCCAATAGAAGTTCAAAGCTTCTTTTTTCAACTTCAAAATCCAAAAAGCATGTTCGCCACTACCTACAGGCAGAGTGTATGCTCGTGAAAATTGACATCCATTGTCGTGTTCAAGGGGATGTGGTTCTTGAGTGCATACATTTAACCGAAGATTTTGTTCGTGAGGATATGATGTTTAAAGTTATGTTTCATACTGCATTTGTGCGGCCAAATATTTTGACGCTGAACCGTGATGAAATTGATATTTTGTGGGATGCAAAGGAACTATTTCCCAAGGACTTTAAAGCAGAGGTGCTTTTTTTGGACGCTGATGCTGTTATACCTGATCTAACCACAGTCACTGTGAGTGAAGAAGCAAATGAGATCGAGAGTGCCGAGACAGAAAGTGCTTCACCTGATGAATTCTATGAAGTAGAAGAGATTTTCAGCAATGTAATTGATGCACAGGAAGGTAAGACGACAGAGTATGATTCTCATGCTTTTCATGAAAATGTGGTGGATGATGAAAACCATAAAGAGGTCTGGAAGGAAGAGTTGGACCCTCCTACTTTTGAGGATTGTACTCCAGATGACAGGAGTCCCAAGCAGGTTGACAACATGGATTCTGGTAATGCAGTGAAAGACATCTCTGTTGACGATGTGCACTATAAATTTGATGGGAGCATGGATTCAGATCTTCACGCAGTGAAGGACATTGCTGTGGATGATGGAGAAATTAATTCAACTTTCACTGCAGTTATTTCTGATATAACAAAACCTCCTCTGGAAACAAAGGATGTCACAGCGGATGTGCACCAAGAATTAGCAATTATGCAAAATGAACATGACGATGATAAGGAGGCAACAGAGAAGGAATTAGACTCCAAGTCTGGGCAGCAGATGCCTGATTTGTCTGAACAAAATTCTGGTAAACTACTTCCATCTACTCCCAAGAAACAACTTTCATCTAACTCGAAGCCAGTTGGAGATACATTTGCAGTGAAGCAAAAGATTAAACAGCAAGAAACCCATGGTTTTCAGGCAAAACAAGCTAAGCCCAATGCAATGACTAGGTGGATTCCTTCTAACAAGGGTTCTTATACAAATTCAATGCATGTCTACTATCCACCTTCAAGAAATAATAGTGCACCAGCTGCACTGACAAATTTGTCCACCTCAAAGGAGAAAATGGAAGATGCCAAAACAAGATCTTTATCTGCTCCTGTAATCTCTGGGGTTGTCGTTTCTATTGACAAGACAAATGACCTAAAAAGTCGTAAGGTGGCTGCTTCAAAATCTTCTGGCTATATATCAGCAGAAATAGATGCAAAAAGTCCACCATCACCATTGCCATCAATTAAAGAGACATATTTCCAGTCAGATACTCAGGCACAACAACAGAGCTCAGAGCAAGTGCTACAGcctcccccacctcctcctccccctcctccacccccacctccccctcATAGTAGAAACTCTTCAGATATTTTTGAATCCTTATCAACAAAGGATGATGTATCAGCTCAAGACTCTCCATCTCCACTAGTATCATCATCATCTTTTTTGGGTAGAAAAGGGTCCATCATGGAGCTAATGTcaccgccactgccgccaccgccaccaccaccaccaccttcaactttaacatcatttacaagacaccctgcaacttctcttccttcccctccacccccaccaccgcccccacctccacccccaGTTTTTGGGCAAAATAAAGGGGGCTTAGCACCTTTTCCATCCCCTTGGAAATCTGTGACCTCACAAATAGATGAAGAGACTAGTGGATCTTTAACACTTCCTACAACCCCTCTTCCTTTTGCAAGCAATGAAATTGGATTGGAAGTTTCTAAAGTGGGTACTGTAGTGGCCccttcacagcctcctcctcctccaccaccacctccaatgcctcctccAAGGTATGAAGTTTCATCCATTCCTCCTCTAACACCACTAGCAACACCTCTTCCAAAGCCTGAAATTCCATCAATTCCTCCTACTAATTCACATATTGATTctcccacaccacttgtcccttccctacccccgccccctccccctccccctccccctccTTTTAATAGAGTTTCAACACTGCCACCTCCTTTGAATAGAGCTCCATTGCCACCACCTCCACCACCTCCACCTCCTTTTAGTCAAGCTTCACCACCGCCTCCTCCATTGTATAGAGCTCCACCTACACCTCCCCCACCACCACCACTTTCTCCATCAACTGTAGTGTCACCCCCCCCCCCACCACCTCTTCCTCCATCTTGTGGAGCGCCACCTCCCCCCCCCCCCCCTCTTCCTCCATCTTGTGGAGCGCCACCTCCCCCCCCCCCCCCTCTTCCTCCATCTTGTGGAGCGCTACCTCCCCCCCCACCACCTTTTCCTCCATCAATTGGAGCCCCACCTCCACCTCCACCACCTTTTCCTCCATCAAGTGGAGCCCCACCTCCACCTCCACCACCTTTTCCTCCATCTAGTGGAGCCCCACCTCCCCCACCTCCTCCATTTCGTGGAGCACCACCACCACCTCCTCCATTGCCTGGAGCACCACCACCTTCTCCTCCAATGCCCGGAGCACCACCACCTCCTCCTCCAAGGCCTGGAGCACCACCACCTCCTCCAATGCCTGGAGCACCACCTCCACCACCACCTCCTGGTGGTCAAGGACCACCTCCACCGCCTCCTCCTGGTGGTCGAGGACCACCTCCTCCACCTCCTCCTGGTGGTCGAGGTCCCCCTCCACCTCCTCCTGGTGTTCCTGGCGCTCCTTGTCCTCCTGGGGGTGGACCTCCACCACCTCCACCCTTCGGTGCAAAAGGTGCAAATGCTGGAATTGATCCAAGAGGGAGGGGACGTGGATTAGCACGCCCTGGAGCGGCCAGTGCACCCAAACGATCCTCGTTAAAGCCTTTGCATTGGAGCAAGGTTACAAGGGCACTACAAGGAAGTTTATGGGAAGAATTACAAAGACATGGAGAACCACAAATTGCACCAGAGTTTGATGTTTCAGAGCTAGAGAAGCTTTTCTCTGCAAATGTTCCAAAACCTGCTGATAAAGCTGGAGATAAGAAGAAGTCTGCTGGATCTAAAACTGACAAAGTCCACTTGGTTGATCTAAGGAGGGCTAATAATACTGAAATCATGCTCACTAAGGTTAAGATGCCACTTCCTGATATGATGGCTGCAGTACTGGCTATGGATGAGTCAGCATTGGATGTTGACCAAGTGGACAATCTCATTAAATTTTGTCCTACCAAAGAGGAGATGGAACTTTTGAAGAATTACACAGGTGACAAGGAGAATTTGGGGAGGTGTGAACAGTTTTTCTTGGAGCTGATGAAGGTGCCAAGGGTGGAGTCAAAATTAAGAGTATTTTCTTTCAAGATTCAGTTTGGTTCTCAGCTTACAGATTTTAAGAAGAGTTTAAACACTGTGAACTCTGCCTGTGAAGAGGTCCGGAAATCTGCTAAACTGAAGGATATCATGAAGAAAATTCTTTATTTGGGTAATACATTGAATCAGGGAACAGCAAGGGGATCTGCAGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAGGTCCTAGCTGATAAGTCGCCTGGACTCCTTGATTTTCACCAGGACCTTGTTAGTCTGGAAGCTTCCACCAAGATACAATTGAAGTCATTAGCAGAAGAGATGCAGGCAATTGTCAAGGGATTAGAAAAGGTTAAACAAGAATATGCAGCATCTGAAAATGATGGACCTGTGTCTGAAGTTTTCCGTAAGTCATTGAAAGAATTTGTAGGTGTAGCTGAGTCAGAGGTAGCATCTCTGACAAACCTTTATTCTGTAGTGGGTAGAAATGCTGATGCACTTGCACTATATTTTGGTGAGGATCCTGCTCGTTGCCCATTTGAGCAAGTTACCACAACTCTGCTAAATTTTATAAGGTTGTTTCGGAAAGCACATGAAGAGAATTGCAAGCAGGCAGAGTTAGAGAAGAAGAAAGCTGAGAAAGAGGCTGAAATGGAGAAGGCTAAGGGCATTAACTTGACAAAGAAGGGTACAAAAAACAGTTGA 4833 0.4256 MALFRRLFYRKPPDRLLEISERVYVFDCCFSTDVLEEDEYRVYMAGIVAQLQDHFPDASFMVFNFREGERRSYISDILSQYDMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLFRKQYSGEQKTLEMVYKQAPRELLHLLSPLNPQPSHFRYLQYISRRHLGTEWPPSETPLYLDCLILRDLPLFDDGKGCRPVVRVYGQDPSIPANRSSKLLFSTSKSKKHVRHYLQAECMLVKIDIHCRVQGDVVLECIHLTEDFVREDMMFKVMFHTAFVRPNILTLNRDEIDILWDAKELFPKDFKAEVLFLDADAVIPDLTTVTVSEEANEIESAETESASPDEFYEVEEIFSNVIDAQEGKTTEYDSHAFHENVVDDENHKEVWKEELDPPTFEDCTPDDRSPKQVDNMDSGNAVKDISVDDVHYKFDGSMDSDLHAVKDIAVDDGEINSTFTAVISDITKPPLETKDVTADVHQELAIMQNEHDDDKEATEKELDSKSGQQMPDLSEQNSGKLLPSTPKKQLSSNSKPVGDTFAVKQKIKQQETHGFQAKQAKPNAMTRWIPSNKGSYTNSMHVYYPPSRNNSAPAALTNLSTSKEKMEDAKTRSLSAPVISGVVVSIDKTNDLKSRKVAASKSSGYISAEIDAKSPPSPLPSIKETYFQSDTQAQQQSSEQVLQPPPPPPPPPPPPPPPHSRNSSDIFESLSTKDDVSAQDSPSPLVSSSSFLGRKGSIMELMSPPLPPPPPPPPPSTLTSFTRHPATSLPSPPPPPPPPPPPPVFGQNKGGLAPFPSPWKSVTSQIDEETSGSLTLPTTPLPFASNEIGLEVSKVGTVVAPSQPPPPPPPPPMPPPRYEVSSIPPLTPLATPLPKPEIPSIPPTNSHIDSPTPLVPSLPPPPPPPPPPPFNRVSTLPPPLNRAPLPPPPPPPPPFSQASPPPPPLYRAPPTPPPPPPLSPSTVVSPPPPPPLPPSCGAPPPPPPPLPPSCGAPPPPPPPLPPSCGALPPPPPPFPPSIGAPPPPPPPFPPSSGAPPPPPPPFPPSSGAPPPPPPPFRGAPPPPPPLPGAPPPSPPMPGAPPPPPPRPGAPPPPPMPGAPPPPPPPGGQGPPPPPPPGGRGPPPPPPPGGRGPPPPPPGVPGAPCPPGGGPPPPPPFGAKGANAGIDPRGRGRGLARPGAASAPKRSSLKPLHWSKVTRALQGSLWEELQRHGEPQIAPEFDVSELEKLFSANVPKPADKAGDKKKSAGSKTDKVHLVDLRRANNTEIMLTKVKMPLPDMMAAVLAMDESALDVDQVDNLIKFCPTKEEMELLKNYTGDKENLGRCEQFFLELMKVPRVESKLRVFSFKIQFGSQLTDFKKSLNTVNSACEEVRKSAKLKDIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHYLCKVLADKSPGLLDFHQDLVSLEASTKIQLKSLAEEMQAIVKGLEKVKQEYAASENDGPVSEVFRKSLKEFVGVAESEVASLTNLYSVVGRNADALALYFGEDPARCPFEQVTTTLLNFIRLFRKAHEENCKQAELEKKKAEKEAEMEKAKGINLTKKGTKNS 1610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01982 1610 PANTHER FORMIN-J 1 1603 - -
Cca11g01982 1610 SMART PTEN_C2_2 198 338 IPR014020 -
Cca11g01982 1610 Coils Coil 1477 1497 - -
Cca11g01982 1610 MobiDBLite consensus disorder prediction 416 433 - -
Cca11g01982 1610 SMART it6_source 624 1610 IPR015425 -
Cca11g01982 1610 MobiDBLite consensus disorder prediction 787 807 - -
Cca11g01982 1610 MobiDBLite consensus disorder prediction 762 779 - -
Cca11g01982 1610 MobiDBLite consensus disorder prediction 681 700 - -
Cca11g01982 1610 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1198 1596 IPR015425 -
Cca11g01982 1610 MobiDBLite consensus disorder prediction 416 439 - -
Cca11g01982 1610 MobiDBLite consensus disorder prediction 722 754 - -
Cca11g01982 1610 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1272 1598 - -
Cca11g01982 1610 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Cca11g01982 1610 MobiDBLite consensus disorder prediction 527 592 - -
Cca11g01982 1610 MobiDBLite consensus disorder prediction 701 721 - -
Cca11g01982 1610 Gene3D - 205 336 - -
Cca11g01982 1610 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Cca11g01982 1610 MobiDBLite consensus disorder prediction 1257 1272 - -
Cca11g01982 1610 MobiDBLite consensus disorder prediction 913 1178 - -
Cca11g01982 1610 MobiDBLite consensus disorder prediction 1586 1610 - -
Cca11g01982 1610 MobiDBLite consensus disorder prediction 652 1210 - -
Cca11g01982 1610 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cca11g01982 1610 MobiDBLite consensus disorder prediction 507 526 - -
Cca11g01982 1610 Pfam Formin Homology 2 Domain 1202 1570 IPR015425 -
Cca11g01982 1610 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Cca11g01982 1610 MobiDBLite consensus disorder prediction 860 901 - -
Cca11g01982 1610 Gene3D Formin, FH2 domain 1198 1582 IPR042201 -
Cca11g01982 1610 MobiDBLite consensus disorder prediction 1253 1272 - -
Cca11g01982 1610 MobiDBLite consensus disorder prediction 1586 1602 - -
Cca11g01982 1610 MobiDBLite consensus disorder prediction 818 842 - -
Cca11g01982 1610 Coils Coil 1571 1600 - -
Cca11g01982 1610 MobiDBLite consensus disorder prediction 507 592 - -
Cca11g01982 1610 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01982 Cca-Chr11 45209330 45227686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01982 1176 1605 FH2 protein (formin) Gene Family AT5G07740 79.677 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01982 - - vun:114178199 1301.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01982 11 45209330 45227686 Cca11g01982 11 45209330 45227686 ECH