Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01974 ATGGAAACTGGAATAATCCAGGGACCTTTGGGATTTCGTTCCCTGTCTAAATTCATATTATGCACCATTTCTGGGGCCCTCACCGTGTGTTTTGCCATTGCTGGGGCCCTCACAGGAGCTATAGCTGGTGCTTTAGCAGCTAAGGCTACTAAGAGTGGTCTTCTCCGGGGAGTTTCATTGGGTGCCATTGCTGGCTCCATACTCTCGGTGGAGGTTTTGGAAGCTTCACGTGCCTACTGGTGCATGGAGCAAACTGGCTCACGGGGGGCATCATCTATGGCAGATTTTATAGAGGAACTTGTTCGTGGGAGGCTTGTTGAGGAGTCCCTTACACCTGCTATTTTAACTGCTTACAATTTGCAGTTTGAGCAGGCTGGCATCGCTAATACAGGCTATGATGAGATTCATGATATTCATGGCTTAGTGGCACCTAGAGGATTGTCAGGAGATTCATTGAAGAAGTTACCGCACCATATGATCACAAAGGATATGAAGGCAGAGAATACTTGCTGTGCAATATGTTTGCAGGACATTGAAGTAGGCGAAATTGCAAGAAGCTTACCTCGCTGTCACCATACATTTCACTTGATATGTGTGGACAAATGGCTTGTCAAGAATGATTCGTGTCCTGTCTGCAGACAGAATGTGTAA 651 0.4639 METGIIQGPLGFRSLSKFILCTISGALTVCFAIAGALTGAIAGALAAKATKSGLLRGVSLGAIAGSILSVEVLEASRAYWCMEQTGSRGASSMADFIEELVRGRLVEESLTPAILTAYNLQFEQAGIANTGYDEIHDIHGLVAPRGLSGDSLKKLPHHMITKDMKAENTCCAICLQDIEVGEIARSLPRCHHTFHLICVDKWLVKNDSCPVCRQNV 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01974 216 Pfam Ring finger domain 171 213 IPR001841 -
Cca11g01974 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 216 IPR013083 -
Cca11g01974 216 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 12 215 - -
Cca11g01974 216 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 12 215 IPR044523 -
Cca11g01974 216 SMART ring_2 171 212 IPR001841 -
Cca11g01974 216 ProSiteProfiles Zinc finger RING-type profile. 171 213 IPR001841 -
Cca11g01974 216 SUPERFAMILY RING/U-box 152 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01974 Cca-Chr11 45154569 45158270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01974 14 216 C3H Transcription Factor Family AT1G74410 55.882 8.89e-76 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01974 - - gmx:100800105 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01974 11 45154569 45158270 Cca11g01974 11 45154569 45158270 ECH