Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01971 ATGGAAAACGCGGATCACATCGATTTACCTCCAGGATTTCGCTTCCACCCCACCGATGAAGAGCTCATAAGCCATTATCTCTACAAAAAGGTGATGGACACCAAGTTCTGCGCCAGGGCCATTGGAGAAGTCGACCTTAACAAGTCCGAGCCTTGGGATTTGCCATGGAAAGCCAAAATGGGAGAAAAGGAGTGGTACTTTTTCTGCGTGAGAGACAGAAAATACCCCACTGGGTTGAGAACCAACAGAGCCACTGAAGCTGGGTACTGGAAGGCCACGGGGAAAGACAAAGAGATTTTCAGAGGTAAATCGCTCGTTGGAATGAAGAAAACTCTGGTCTTTTACCGAGGTCGAGCACCCAAAGGAGAGAAAAGCAACTGGGTCATGCACGAGTACAGACTCGAGGGTAAATTCTCCGTTCACAACCTCCCCAAAACTGCAAAGAACGAGTGGGTGATTTGTAGGGTGTTTCAGAAGAGTTCAGCTGGGAAGAAAACCCATATTTCGGGGATAATGAGGTTGGACTCTTTCGGGAACCAATTCGCTTCCTCTGCTCTGCCACCTCTCTCCGATTCTTCACCTTCTATCGGCAACAACACGAAACCATTCAATGATTCGGTTTACGTGCCCTGCTTCTCCAATCCAATTGAAAGAAACCCTGAAGGGGTCTTTGATTCCGTTTTTGGGGTTTCTTCAAATTCATTCGACATTCTTCCCAGAGTGCCACCTTCTGCTTCCTTCTACGCTCAACCCGCGCCTAATTTCCCATTTCAAGCTTCTCTCTGCACTCAGCAGGACCACACAATCTTGCGAGCTTTGTGTGAGAACAATGGTTTCAAGTCAGAGAGGGACATCACCAGTGTCTCGCAGGAAACGCCTCTCACTCCTCATGTTAACGCTCAACCCTCTTCCAATTTTGACATGGGTAGGAGGCCCTTTCACAACCACAATCACGCACCTGTTTCTGTTGCGCCATCGGATCCTGATGGTTTCTGGATTTACTAG 1005 0.4826 MENADHIDLPPGFRFHPTDEELISHYLYKKVMDTKFCARAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFRGKSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFSVHNLPKTAKNEWVICRVFQKSSAGKKTHISGIMRLDSFGNQFASSALPPLSDSSPSIGNNTKPFNDSVYVPCFSNPIERNPEGVFDSVFGVSSNSFDILPRVPPSASFYAQPAPNFPFQASLCTQQDHTILRALCENNGFKSERDITSVSQETPLTPHVNAQPSSNFDMGRRPFHNHNHAPVSVAPSDPDGFWIY 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01971 334 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Cca11g01971 334 Gene3D NAC domain 18 163 IPR036093 GO:0003677|GO:0006355
Cca11g01971 334 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Cca11g01971 334 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
Cca11g01971 334 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 329 - -
Cca11g01971 334 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 2 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01971 Cca-Chr11 45132192 45133850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01971 7 334 NAC Transcription Factor Family AT5G07680 58.912 1.07e-130 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca11g01971 NAM 1.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01971 - - gmx:100798002 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00599 03 10430559 10432770 Cca11g01971 11 45132192 45133850 ECH
Cca11g01971 11 45132192 45133850 Cca11g01971 11 45132192 45133850 ECH