Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01970 ATGGCGTTCTTAGCTCTTCTCTTGCTGGGGTTTCTCTCATGTGTGTATGCTGACACTCATGGTTGGATGGATGCTCATGCAACCTTCTATGGAGGGGGTGATGCGTCTGGCACAATGGGTGGAGCATGTGGATATGGAAACCTGTATAGCCAGGGTTATGGAACTAACACAGCTGCTTTGAGCACGGCCTTGTTCAACAATGGTTTGAGCTGTGGGGCCTGCTTTGAGATCAAGTGTGTGAATGACCAAAGGTGGTGCCTTCAGGACTCAGTTGTGGTCACTGCCACAAATTTCTGTCCTCCAAACAATGCCCTCCCAAATGATGCAGGTGGCTGGTGCAACCCTCCCCTTCAACATTTTGATCTCTCTCAGCCTGTTTTTCAACAAATTGCTCAATACAGAGCTGGCATAGTACCTGTAGCTTTCAGAAGGGTGGCATGTCAAAAAAGGGGAGGCATCAGGTTCACCATGAATGGCCATTCATACTTCAACCTAGTCCTAATCAGCAACGTTGGTGGTGCTGGTGATGTTCAAGCAGTTTCCATCAAAGGTTCAAGGACTAATTGGCAACCAATGTCCAGAAACTGGGGTCAGAACTGGCAAAGCAACACTTACCTCAATGGACAAAGCCTCTCCTTTAAGGTTACCACCAGCGACGGCCGCACCTTGGTCTCTTACGATGTGGCCCCTAGTAGCTGGTCCTTTGGCCAGACCTTCACAGGGCAACAATTCAATTAA 738 0.4878 MAFLALLLLGFLSCVYADTHGWMDAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDQRWCLQDSVVVTATNFCPPNNALPNDAGGWCNPPLQHFDLSQPVFQQIAQYRAGIVPVAFRRVACQKRGGIRFTMNGHSYFNLVLISNVGGAGDVQAVSIKGSRTNWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTLVSYDVAPSSWSFGQTFTGQQFN 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01970 245 Gene3D - 152 244 IPR036749 -
Cca11g01970 245 PANTHER EXPANSIN 5 245 - -
Cca11g01970 245 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 241 IPR007117 -
Cca11g01970 245 SUPERFAMILY Barwin-like endoglucanases 21 170 IPR036908 -
Cca11g01970 245 Pfam Lytic transglycolase 57 141 IPR009009 -
Cca11g01970 245 PRINTS Expansin/Lol pI family signature 21 36 IPR007118 GO:0005576
Cca11g01970 245 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Cca11g01970 245 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Cca11g01970 245 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Cca11g01970 245 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Cca11g01970 245 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Cca11g01970 245 PRINTS Expansin signature 52 66 IPR002963 GO:0009664
Cca11g01970 245 PRINTS Expansin signature 79 90 IPR002963 GO:0009664
Cca11g01970 245 PRINTS Expansin signature 91 101 IPR002963 GO:0009664
Cca11g01970 245 PRINTS Expansin signature 110 127 IPR002963 GO:0009664
Cca11g01970 245 PRINTS Expansin signature 127 140 IPR002963 GO:0009664
Cca11g01970 245 PRINTS Expansin signature 151 163 IPR002963 GO:0009664
Cca11g01970 245 PRINTS Expansin signature 163 184 IPR002963 GO:0009664
Cca11g01970 245 PRINTS Expansin signature 198 219 IPR002963 GO:0009664
Cca11g01970 245 PRINTS Expansin signature 227 243 IPR002963 GO:0009664
Cca11g01970 245 SUPERFAMILY PHL pollen allergen 149 241 IPR036749 -
Cca11g01970 245 SMART dpbb_1 57 142 IPR007112 -
Cca11g01970 245 Gene3D - 12 148 IPR036908 -
Cca11g01970 245 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 152 IPR007112 -
Cca11g01970 245 PANTHER EXPANSIN-A15 5 245 IPR002963 GO:0009664
Cca11g01970 245 Pfam Expansin C-terminal domain 153 230 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01970 Cca-Chr11 45092336 45096033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01970 4 244 Expansin Gene Family AT2G03090 77.273 5.59e-143 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01970 - K20628 gmx:100816718 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00593 03 10292948 10295443 Cca11g01970 11 45092336 45096033 ECH
Cca07g02175 07 49913654 49915078 Cca11g01970 11 45092336 45096033 ECH
Cca09g00234 09 5605522 5607699 Cca11g01970 11 45092336 45096033 ECH
Cca06g00635 06 18003590 18005898 Cca11g01970 11 45092336 45096033 ECH
Cca11g01970 11 45092336 45096033 Cca11g01970 11 45092336 45096033 ECH