Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01969 ATGTACCCATTTGTGGGAGTGGAGTTTTGGATGGGTGTTCGTATCCTTGTGTGGCCGGAGGGTGTGCTTGTTCGTGGAAAGTGGGTTCAAAGGATGTCCCTTTGTGTGGTCGAAAGGTGTACCTGTTCGTGGCGAGTAGGTGTGAAGGATGTCCCTTTGTGTGGTCGTACACCCTTTGGTGGTACATTCTTTGTGCGCATTGTGTTTGTTCGGGTCTCTCAGGGTTGTGAAATGGCTATTGTTGAAGAGATAAATGGGTCCTCGGGGTTCTCTGGGTCTTCATCCAGTGCAGGGTATTCAGCCCATTTTAGCGAGGACGAGGTGTCTGCTAGTTCTTCCCGACGATTATTTGGTAGTAATGCTACCGAGAGCTCATACGAGTCTTCTAGATCAGAGCTTCGCgatgttgtgatggatccgcgtgattatcgacaaaagttcccccctatgagTTACCTCACACCTTTTCTTTTCCTCTACATTGTCTTCACTATCTCAAAAAGGATGGGAAGAGTTAAATTGAAGATAAAGAAATTAGAGAGCATAAGCAATCGGCATGTCACTTTTTCAAAGAGAAAAAGTGGAATTTTGAAGAAAGCAAAGGAATTATCAATACTATGTGATATAGATATTGTCCTTCTCATGTTTTCTCCAACAGGAAAGCCTACATTGCTACAAGGAGAGCGCAGCAATCTTGAGGAGGTCATTGCAAAATTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGCAGGAAAATGGAGAGCCTTGAAGCGCTAAAGAAAACCTTCAAGAAGTTGGATCATGATGTAAAAATACAAGATTTCGTAGGTACAAGCAACCAAAATGTTATGATCTACATGCAGGAAATGTCTCACCAAGTGAGGGTTTTACAAGCTCAACTAACAGAAGTACATCAGAGACTGAGCTATTGGAATAATCTAGAGAAGATCAATCACTTGGAACATCTTAGGCAAAGGGAAGACTCACTACGGAAATCAATCAATCGAGTGTGCCTCCAGAAGGAAAATTTAGGAAAGCACCAACTGATGTCACTTGAATGTGCTAACCAGTTGCAGGAAGGGATGACATTACCCTTGATGATGGCAAATCTGCAAGAATCCCAACCCCTGTCTTGGCTTTTGAATAATGATAATCATCAGTTGATGTTACCTAATGAACCAAAATATCTATCATTTAGTGATAATACCAATAGAGATGCTGAGTGCTCAACTGACATTTCACTCCCAAGCTATTCTGGTTATATTGGGAACAATAAACTTGAAGTTGGCAGCTCTCCTCAGGTCAATACATTGGGTCAGGGAGGTGGTGCCATGAATGAGTTAAATGGAACTACTTACTTAAATGTACAACGATGTGACCAGTTTGCATACCCTCCTCCACCAGATATTGAGGAAGTGAAAAATTACCCAACAATGAACAACAGTAAATCAAACACTGTGGATTACCAAGTTAATAGCAACTTCGATCTTCCCAGGTCACTGTTTGAAAATGGACACCAGTTTTGGAATTCTGCTTCTGGGTCTTGTGGGATTGCCATGTATAATGAGAATGGCTACCATAGGTAA 1587 0.4058 MYPFVGVEFWMGVRILVWPEGVLVRGKWVQRMSLCVVERCTCSWRVGVKDVPLCGRTPFGGTFFVRIVFVRVSQGCEMAIVEEINGSSGFSGSSSSAGYSAHFSEDEVSASSSRRLFGSNATESSYESSRSELRDVVMDPRDYRQKFPPMSYLTPFLFLYIVFTISKRMGRVKLKIKKLESISNRHVTFSKRKSGILKKAKELSILCDIDIVLLMFSPTGKPTLLQGERSNLEEVIAKFAQLSPQERAKSRKMESLEALKKTFKKLDHDVKIQDFVGTSNQNVMIYMQEMSHQVRVLQAQLTEVHQRLSYWNNLEKINHLEHLRQREDSLRKSINRVCLQKENLGKHQLMSLECANQLQEGMTLPLMMANLQESQPLSWLLNNDNHQLMLPNEPKYLSFSDNTNRDAECSTDISLPSYSGYIGNNKLEVGSSPQVNTLGQGGGAMNELNGTTYLNVQRCDQFAYPPPPDIEEVKNYPTMNNSKSNTVDYQVNSNFDLPRSLFENGHQFWNSASGSCGIAMYNENGYHR 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01969 528 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 169 527 - -
Cca11g01969 528 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 179 223 IPR002100 GO:0003677|GO:0046983
Cca11g01969 528 SMART madsneu2 169 228 IPR002100 GO:0003677|GO:0046983
Cca11g01969 528 Gene3D - 182 265 IPR036879 GO:0003677|GO:0046983
Cca11g01969 528 SUPERFAMILY SRF-like 169 249 IPR036879 GO:0003677|GO:0046983
Cca11g01969 528 Coils Coil 287 307 - -
Cca11g01969 528 PRINTS MADS domain signature 206 227 IPR002100 GO:0003677|GO:0046983
Cca11g01969 528 PRINTS MADS domain signature 171 191 IPR002100 GO:0003677|GO:0046983
Cca11g01969 528 PRINTS MADS domain signature 191 206 IPR002100 GO:0003677|GO:0046983
Cca11g01969 528 ProSiteProfiles MADS-box domain profile. 169 221 IPR002100 GO:0003677|GO:0046983
Cca11g01969 528 PANTHER SERUM RESPONSE FACTOR HOMOLOG 169 527 - -
Cca11g01969 528 CDD MADS_SRF_like 170 249 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01969 Cca-Chr11 45079722 45090329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01969 169 449 Type I MADS-box Gene Family AT2G03060 48.966 2.78e-80 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca11g01969 SRF-TF 7.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01969 - - pvu:PHAVU_003G189100g 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01969 11 45079722 45090329 Cca11g01969 11 45079722 45090329 ECH