Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01967 ATGCACGCAAATGGAGACCCTGCAATTAGGCTCTTCGGCCAGAAGATCCCACTCACAGGAGATGCTGACAAACATGACCATAGAGACCAACCAGACAAGGATGCTGGAGTTGAAAATGTTACCGAGGAAGAGCTGGAAGCTGATCCTCTTACAAATGCTGAAGAGGCTAAGGATTCGGGAACATCCCTTGAGGCTATCGTGAACCTGGAAACACCCTCCACAGAAGAAGAAGCTGCAAAATCAAAAGGTGAGAAGCCAGAGAAGGAAGAAAGCGATGCAGATGAGAAAACACTGAAGAAGCCGGACAAAGTGCTACCATGCCCCCGCTGCAATAGCATGGACACCAAATTCTGCTATTACAACAACTACAACATCAACCAGCCGCGTTATTTCTGCAAAGCTTGTCAAAGATACTGGACTGCAGGTGGCACCATGAGGAATGTTCCTGTGGGGGCAGGAAGGCGCAAGACCAAGAACTCTTCCTCACATTATCGCCACATCACCATCTCTGAGGCCCTTCAAGCAGCTAGAATTGATGCTTCTAATGGAACTTATATTCCAACTTTGAAAAGCAATGGTGGAGTCCTCAGCTTTGGACTAGATGCACCTATTTGTGATTCCATGGCATCTGTCCTCAATCTTGGAGATAAAAAGCCTCTTAATGGCACAAGAAATGGCTTTGAGAATCAAAGACTCTCATTAACTTGCAAAAGTGGTGAAAAAGGTGATGGCTCTTCAACAAGTACCATGGGAGAAAGTAACAAAAGCACCTTCCAACAACAACCAGTGCTCCAAAATCACGGTTTACTTACTCAACTTCCTTGTATTCCTGGTGTTCCTTGGCCCCATGCATGGAATTCTCCACTTCCCTCACCAGCTTTGTGTCCTTCAGGATTACCCCTACCATTCTATCCTGCTACATTTTGGAACCCTGGCATGCCAGGGAATTGGAATGTTCCATGGTTTCCCCCACATTCACCTGCTTCAAACCCAAACTCTCCAAACTCTGGTCCAAACTCTCCAACTTTAGGGAAGCACTCTAGGGAGGGTGACATGATTAAGCAAGACTCTTTGCAGAAAGAAGAGACTTCAAAACCAAGAAACGGGTCGGTTTTGGTTCCCAAAACCTTAAGAATTGATGATCCAAGTGATGCTGCAAAGAGTTCAATATGGGAAACTCTAGGAATTAAGAATGAGTCGGTGAGTGGAGGAAGTATGTTTAAGGCCTTCCAACCAAAGAAGGATGAAAAGAATCATGTTGAAGCCTCTCCAGTGCTGATGGCTAACCCTGCAGCTTTGTCTAGATCACTTAATTTTCATGAGAACTCATGA 1332 0.4535 MHANGDPAIRLFGQKIPLTGDADKHDHRDQPDKDAGVENVTEEELEADPLTNAEEAKDSGTSLEAIVNLETPSTEEEAAKSKGEKPEKEESDADEKTLKKPDKVLPCPRCNSMDTKFCYYNNYNINQPRYFCKACQRYWTAGGTMRNVPVGAGRRKTKNSSSHYRHITISEALQAARIDASNGTYIPTLKSNGGVLSFGLDAPICDSMASVLNLGDKKPLNGTRNGFENQRLSLTCKSGEKGDGSSTSTMGESNKSTFQQQPVLQNHGLLTQLPCIPGVPWPHAWNSPLPSPALCPSGLPLPFYPATFWNPGMPGNWNVPWFPPHSPASNPNSPNSGPNSPTLGKHSREGDMIKQDSLQKEETSKPRNGSVLVPKTLRIDDPSDAAKSSIWETLGIKNESVSGGSMFKAFQPKKDEKNHVEASPVLMANPAALSRSLNFHENS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01967 443 MobiDBLite consensus disorder prediction 328 348 - -
Cca11g01967 443 ProSitePatterns Zinc finger Dof-type signature. 107 143 IPR003851 GO:0003677|GO:0006355
Cca11g01967 443 PANTHER CYCLIC DOF FACTOR 2 1 442 IPR045174 GO:0003700|GO:0006355
Cca11g01967 443 MobiDBLite consensus disorder prediction 19 40 - -
Cca11g01967 443 ProSiteProfiles Zinc finger Dof-type profile. 105 159 IPR003851 GO:0003677|GO:0006355
Cca11g01967 443 PANTHER CYCLIC DOF FACTOR 1 1 442 - -
Cca11g01967 443 MobiDBLite consensus disorder prediction 357 376 - -
Cca11g01967 443 MobiDBLite consensus disorder prediction 75 103 - -
Cca11g01967 443 Pfam Dof domain, zinc finger 102 159 IPR003851 GO:0003677|GO:0006355
Cca11g01967 443 MobiDBLite consensus disorder prediction 1 103 - -
Cca11g01967 443 MobiDBLite consensus disorder prediction 236 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01967 Cca-Chr11 45063844 45066553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01967 1 441 C2C2-Dof Transcription Factor Family AT3G47500 47.983 1.33e-115 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca11g01967 zf-Dof 3.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01967 - - gmx:778113 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00590 03 10242919 10246292 Cca11g01967 11 45063844 45066553 ECH
Cca07g02169 07 49860971 49864544 Cca11g01967 11 45063844 45066553 ECH
Cca06g00639 06 18072197 18076158 Cca11g01967 11 45063844 45066553 ECH
Cca11g01967 11 45063844 45066553 Cca11g01967 11 45063844 45066553 ECH