Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01962 ATGGATTCTCAGCCACTCATGGGTTGGAACTCTTACTTCGAAATTGATGAAAAACCATTTCCATTTACGTGCCAATTTTCTTACAGTGGAAAGGGTGAAGTGTATCCTGCACTGGATTGGGCACATGATTTTCCCATACAAGACTATTATTTTGATGCAGTTCCTCTTATGGACTATTACCCTTCAGATCCTTTATATGAAACTCTCTCCATTGAACCAACACCAACCGTGCAAGACTATGATTTTTATGATATTAAAAAGGGGTTTTCTGTCTGGAATGAAGTTGATGCTGTGTTAGATTCAGAAAAAGTTTTTTTATTTTGCAACAATGAAGAAAGTGGGAGTGGgaaggaaatgatggaagatggaaaagttaacagagagagagaagagagaaTTGGCAGTAGCAGTACCAGATTGTTGTCAAGGAAGATATTATCTCAGTACTTCTACATGCCCATTACACAAGCAGCCAGAGAACTTAACGTGGGCCTAACACTTCTGAAAAAAAGGTGTAGGGTATTGGGAATCAGAAGATGGCCCCACAGGAAGCTAATGAGCCTACAAACCCTGATAAATAATATACAGGAGCTAGGAAAAGAGGAAGGAAAGGAGAGTGAAGAGAAGTTAAGAAGTGCGATTGAGATATTGGAGAGGGAAAAGAAGCTTTTGGAGGAAATGCCAGATATTGAACTTGAAGATAATACAAAGAGGCTTAGACAAGCCTGTTTCAAGGCTAATTACAAAAAGAGGAGGCTCGAAGGGCGCAGGGAAACACAGTCTTCTTCGTTCAGTGGCCATGCTAGAACTATTGACACAACAGGAGAATATAGTTATGAAAATGAAGAAGAACGAGACATCAAATATCCGTTGTCCTCAGTTAACGTAATGATCTAA 897 0.3746 MDSQPLMGWNSYFEIDEKPFPFTCQFSYSGKGEVYPALDWAHDFPIQDYYFDAVPLMDYYPSDPLYETLSIEPTPTVQDYDFYDIKKGFSVWNEVDAVLDSEKVFLFCNNEESGSGKEMMEDGKVNREREERIGSSSTRLLSRKILSQYFYMPITQAARELNVGLTLLKKRCRVLGIRRWPHRKLMSLQTLINNIQELGKEEGKESEEKLRSAIEILEREKKLLEEMPDIELEDNTKRLRQACFKANYKKRRLEGRRETQSSSFSGHARTIDTTGEYSYENEEERDIKYPLSSVNVMI 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01962 298 MobiDBLite consensus disorder prediction 259 275 - -
Cca11g01962 298 Pfam RWP-RK domain 141 188 IPR003035 -
Cca11g01962 298 PANTHER PROTEIN RKD1-RELATED 38 264 - -
Cca11g01962 298 ProSiteProfiles RWP-RK domain profile. 123 208 IPR003035 -
Cca11g01962 298 PANTHER PROTEIN RKD4 38 264 IPR044607 GO:0003700
Cca11g01962 298 Coils Coil 200 227 - -
Cca11g01962 298 MobiDBLite consensus disorder prediction 254 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01962 Cca-Chr11 45014272 45015621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01962 127 255 AtRKD Transcription Factor Family AT1G18790 66.923 6.14e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Cca11g01962 RWP-RK 5.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01962 - - gmx:100788666 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01962 11 45014272 45015621 Cca11g01962 11 45014272 45015621 ECH