Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01958 ATGAAAAAGAGGCAAGTGGTGGTGAAAAGAGAATATGGGACGTCATCTTCTGCGGTGGGGAACATAAGATACGGTGAGTGCCAGAAGAATCATGCAGCGAACACGGGAGGTTACGCTGTGGATGGTTGCAGGGAATTCATGGCCAGCGCCGGAGAAGGATCGAGTGCGGCGCTCACGTGTGCTGCTTGTGGCTGCCACAGGAACTTCCACAAGAGGGAAGTACTGCACGTGCACGGCGTCAACTGA 246 0.5447 MKKRQVVVKREYGTSSSAVGNIRYGECQKNHAANTGGYAVDGCREFMASAGEGSSAALTCAACGCHRNFHKREVLHVHGVN 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01958 81 PANTHER BNAA09G44460D PROTEIN 3 74 - -
Cca11g01958 81 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 23 74 IPR006456 -
Cca11g01958 81 Pfam ZF-HD protein dimerisation region 22 74 IPR006456 -
Cca11g01958 81 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 24 73 IPR006456 -
Cca11g01958 81 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01958 Cca-Chr11 44958724 44959604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01958 1 74 Zinc finger-homeobox gene family AT1G18835 71.053 6.53e-31 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Cca11g01958 ZF-HD_dimer 2.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01958 - - ccaj:109806860 172.94