Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01957 ATGGGGAGGCCACCTTGCTGTGACAAAATTGGGACTAAGAAAGGACCTTGGACTCCAGAAGAGGACATCATGTTGGTGTCTTACATTCAAGAACACGGATCAGGGAATTGGAGATCAGTTCCCGCCAACGCAGGTTTGATGAGATGCAGTAAGAGCTGCAGGCTTAGATGGATCAACTATCTTCGACCAGGTATCAAACGAGGTAATTTCACCGAACATGAGGAGAAGATGATAATCCACCTCCAAGCCCTTCTGGGCAACAGATGGGCTGCAATAGCTTCCTATCTTCCACAGAGGACAGACAACGACATAAAAAACTATTGGAATACCCATTTGAAGAAGAAGCTGAAACAAAATGATCAAAGTGGGAGTGATGAGGGTGTTCATCACCCAGAGGGACATTCTTGTTCTTCTTCTTCATCACATTCAAAGGGTCAGTGGGAGAGAAGACTACAAACAGATATCAAAATGGCCAAGCAAGCCTTGTGTGAAGCTTTGTCCCTTCACAAGCCAGCAACTCATGTTGAGTCAGATACCAAGCCTTCTTCAAGTTCtcaccaccatcccaatgcatcatcatcatcatcaccatatgcatcaAGCTACGAAAACATTTCACGGTTGCTGGAAAACTGGATGAAACCCCCAAACTCAACGGAAACAAATCCACTGGGGTATCACTCCTTCAGCAATGTGATCAACAACACAAGAGGGTCCAGTTCTAGTGAGGGAGCATATAGCACTACCACTACCACTACCACATGCACACAAGATTATGCTTTTGATGAATCCTTCTTGATCCTTAACTCCTCCAAACACAATGGATCTCCTCCACTTGAGACGCACGTGCCTCTTACGCTGTTGGAGAATTGGCTTTTTGATGATGGAGCAGTTCAATGTGATGAAGATCTGATGAACATTTCACTGGAGAAAAGTACTGCAGGTTTGTTTTAG 954 0.4256 MGRPPCCDKIGTKKGPWTPEEDIMLVSYIQEHGSGNWRSVPANAGLMRCSKSCRLRWINYLRPGIKRGNFTEHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKQNDQSGSDEGVHHPEGHSCSSSSSHSKGQWERRLQTDIKMAKQALCEALSLHKPATHVESDTKPSSSSHHHPNASSSSSPYASSYENISRLLENWMKPPNSTETNPLGYHSFSNVINNTRGSSSSEGAYSTTTTTTTCTQDYAFDESFLILNSSKHNGSPPLETHVPLTLLENWLFDDGAVQCDEDLMNISLEKSTAGLF 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01957 317 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 302 - -
Cca11g01957 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca11g01957 317 SMART sant 66 114 IPR001005 -
Cca11g01957 317 SMART sant 13 63 IPR001005 -
Cca11g01957 317 CDD SANT 69 112 IPR001005 -
Cca11g01957 317 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca11g01957 317 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Cca11g01957 317 MobiDBLite consensus disorder prediction 116 132 - -
Cca11g01957 317 CDD SANT 16 61 IPR001005 -
Cca11g01957 317 MobiDBLite consensus disorder prediction 184 199 - -
Cca11g01957 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca11g01957 317 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca11g01957 317 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca11g01957 317 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 302 - -
Cca11g01957 317 Gene3D - 68 132 - -
Cca11g01957 317 MobiDBLite consensus disorder prediction 116 148 - -
Cca11g01957 317 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca11g01957 317 Gene3D - 13 66 - -
Cca11g01957 317 MobiDBLite consensus disorder prediction 173 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01957 Cca-Chr11 44936008 44937671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01957 1 295 MYB Transcription Factor Family AT5G62470 51.183 3.31e-103 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca11g01957 Myb_DNA-binding 5.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01957 K09422 - gmx:100812460 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01957 11 44936008 44937671 Cca11g01957 11 44936008 44937671 ECH