Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01948 ATGGAGGGAGGCGACGATCTCCACCAACATCACCACCACCGTCAGAACTTCCCATTCCAGCTTCTCGAGAAGAAAGAAGAGCAAGAAGCCGCATCATGTTCCACCTCCTCCCCCTACCCTTCCCTAGCAATCTCCGCGGAACCAACCACATCGAATTCCACTCGATCCGCCGCCgcggccgcagcggcggaaaacaaaaaaccaccgccgaaacgcacctcgacgaaggaccggcacacgaaggtcgacgggcgcggccggcgcatccgaatgcccgccctctgcgccgcccgcgtcttccagctgacgcgcgagctagggcacaaatccgacggcgaaaccatcgagtggctcctcccgcaggcgggggccgcCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCCGTGATCGCGGCCACGGGCACCGGCACCATCCCCGCGAACTTCACCTCGCTCAACATCTCCCTCCGAAGCTCAGGGTCCTCCATGTCCGTCCCCTCCCAGCTCCGATCCTCGTACTTCAACCCTAA 609 0.3054 MEGGDDLHQHHHHRQNFPFQLLEKKEEQEAASCSTSSPYPSLAISAEPTTSNSTRSAAAAAAAENKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLPQAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDRGHGHRHHPRELHLAQHLPPKLRVLHVRPLPAPILVLQP 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01948 202 MobiDBLite consensus disorder prediction 1 83 - -
Cca11g01948 202 PANTHER TRANSCRIPTION FACTOR TCP23 23 123 - -
Cca11g01948 202 MobiDBLite consensus disorder prediction 1 30 - -
Cca11g01948 202 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 23 123 IPR005333 GO:0003700
Cca11g01948 202 MobiDBLite consensus disorder prediction 69 83 - -
Cca11g01948 202 Pfam TCP family transcription factor 73 125 IPR017887 -
Cca11g01948 202 Coils Coil 161 163 - -
Cca11g01948 202 MobiDBLite consensus disorder prediction 31 59 - -
Cca11g01948 202 ProSiteProfiles TCP domain profile. 75 129 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01948 Cca-Chr11 44864139 44864747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01948 11 122 TCP Transcription Factor Family AT1G69690 59.821 2.35e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Cca11g01948 TCP 8.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01948 - - pvu:PHAVU_003G190900g 216.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00569 03 9739913 9742086 Cca11g01948 11 44864139 44864747 ECH
Cca11g01948 11 44864139 44864747 Cca11g01948 11 44864139 44864747 ECH