Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01946 ATGGGATCAGAGAGTGTGGCTCCGGCGGTTGAGACATCGAAAAGCAGGTCTTCTCCGGGTAAAGTGAATCCAGGGAAAGTCCCTAGGAAAATTCACAAGGCAGAGAGGGAGAAATTGAAGCGTGAACATTTGAATGAACTCTTTCTTGACCTTGCCAATGCACTTGATCTAAACGAGAACAATGGAAAGGCTTCTATATTGTGTGAAGCTGGTAGGTTGCTGAAAGACTTGCTCTGTCAGATCGATTCCCTCAAGAAAGAGAACGTTACTCTGGTGTCTGAATCTCATTATGTGACCATGGAGAAAAATGAGCTGAAGGAGGAGAATTGTAGCCTAGAAACTCAAATCGAGAAACTTCAAGGTGAGATACAAGCAAAAGTGGCTCAATCTAAACCTGACCTGAATGCACCTCCTCATGTGGAACTTGAGCCACTGGAGCAGACAAATTTTCCAGGACAGGGTCTTCAAATGCACACTATAGAACCTAACTTGCAGCAAGGATCTGCAGTTTTGGTTGTCCCCTTTTGTCCTGATATTCAAGCTTCTTTTCCAGCTCCTAATGTTTCGGAGGTTACGCCAAAATCTACATCCATTGTCAAGAAACCACATGCCAGGTATCCCACGCCCGCAGATTCATGGCCATCACAGCTGCTTGGAGAGCAACCAACTTCAAGTTAG 678 0.4513 MGSESVAPAVETSKSRSSPGKVNPGKVPRKIHKAEREKLKREHLNELFLDLANALDLNENNGKASILCEAGRLLKDLLCQIDSLKKENVTLVSESHYVTMEKNELKEENCSLETQIEKLQGEIQAKVAQSKPDLNAPPHVELEPLEQTNFPGQGLQMHTIEPNLQQGSAVLVVPFCPDIQASFPAPNVSEVTPKSTSIVKKPHARYPTPADSWPSQLLGEQPTSS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01946 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 28 77 IPR011598 GO:0046983
Cca11g01946 225 MobiDBLite consensus disorder prediction 1 20 - -
Cca11g01946 225 MobiDBLite consensus disorder prediction 1 36 - -
Cca11g01946 225 PANTHER TRANSCRIPTION FACTOR BHLH47 4 224 - -
Cca11g01946 225 Coils Coil 102 122 - -
Cca11g01946 225 Coils Coil 74 94 - -
Cca11g01946 225 MobiDBLite consensus disorder prediction 188 225 - -
Cca11g01946 225 PANTHER TRANSCRIPTION FACTOR BHLH47 4 224 - -
Cca11g01946 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 29 104 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01946 Cca-Chr11 44836575 44839131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01946 25 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 50.926 1.22e-59 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01946 - - gmx:100782436 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00565 03 9661080 9662735 Cca11g01946 11 44836575 44839131 ECH
Cca11g01946 11 44836575 44839131 Cca11g01946 11 44836575 44839131 ECH