Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01940 ATGGGAAATTGCTTAGAAAATCGTTGCAAGATTGATGACACTTTGAACTCCCAATCCTGTTCTTCTGATGTTACCAAAGGTCATAGAAGCACCCATTTGTTGGCTCATTCAAGTCCAACACCATATGGACACTGTGATGAGGGTAAACCCGAGATTCTCCCCACTCCAAGATCTGAAGGGGACATACTTTCGTCTCCACATTTAAAAGCCTTCACATTAGATGATCTCAAGAAGGCCACTAGAAATTTCCGTACTGATAGTCTAATTGGAGAAGGGGGATTTGGTTATGTCTATAAGGGGTGGATTGATAGTAAACACTTTAAGCCCACAACGCCTGGAACTGGAATGGTTGTAGCTGTGAAGAAGCTTAAGCCAGAAGGTTTTCAAGGGCATAAGGAGTGGCTGTCTGAAGTGAATTATCTCGGACAACTTCGCCATCCAAATCTTGTCAAACTTATTGGATACTGCCTAGAAGGAGATAACCGGCTTCTAGTGTACGAGTACTTGCCCAACAGATGCTTGGAGAATCATCTATTTCGCAAGGGCATACAACCACTTCCTTGGGCAACAAGAATCAAGGTTGCTATTGGTGCTGCTCGAGGTCTCTCCTTCCTACATGACTCTAAGCAACAAATTATCTACCGTGATTTCAAGGCTTCTAATATTTTATTAGATTCGGAATTTAATGCAAAACTCTCAGACTTTGGATTGGCCAAAGCAGGGCCCACTGGTGATCATTCTCATGTTTCCACTCAAGTTCTGGGCACTCACGGCTATGCTGCTCCTGAATATATTGCTACAGGTCGGTTGACATCAAGGTGTGATGTCTATAGCTTTGGAGTTGTGCTATTGGAACTACTCTCAGGGCGCCATGCTGTTGACAATACAAAATCTGGAGTGGAACATAATCTGGTAGATTGGGCAAGACCCTTTTTGAGTGATAGGAGGAAGTTGTTCAGGATTATAGACACCAAGTTAGAAGGGCAATACCCTCAGAAGGCAGCTTATACAGTTGCAATTATTGCTCTACAATGCATTAGTGAGGCCAAGATTAGACCACAGATGTCTGAGGTTTTGGCTGCCTTGGAACACCTGCCAGCCGTTAGACATACAACCAACCCATCTAGAGAAGAGAAGTCCATTCCCAGTTCCATGAGAGAGGGTGTTGGTCCTGCTGCAAAACTCCCTTTGAGACAAGCATAA 1203 0.4397 MGNCLENRCKIDDTLNSQSCSSDVTKGHRSTHLLAHSSPTPYGHCDEGKPEILPTPRSEGDILSSPHLKAFTLDDLKKATRNFRTDSLIGEGGFGYVYKGWIDSKHFKPTTPGTGMVVAVKKLKPEGFQGHKEWLSEVNYLGQLRHPNLVKLIGYCLEGDNRLLVYEYLPNRCLENHLFRKGIQPLPWATRIKVAIGAARGLSFLHDSKQQIIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDHSHVSTQVLGTHGYAAPEYIATGRLTSRCDVYSFGVVLLELLSGRHAVDNTKSGVEHNLVDWARPFLSDRRKLFRIIDTKLEGQYPQKAAYTVAIIALQCISEAKIRPQMSEVLAALEHLPAVRHTTNPSREEKSIPSSMREGVGPAAKLPLRQA 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01940 400 Gene3D Transferase(Phosphotransferase) domain 1 169 385 - -
Cca11g01940 400 SUPERFAMILY Protein kinase-like (PK-like) 61 363 IPR011009 -
Cca11g01940 400 ProSitePatterns Protein kinases ATP-binding region signature. 89 122 IPR017441 GO:0005524
Cca11g01940 400 Pfam Protein tyrosine and serine/threonine kinase 86 360 IPR001245 GO:0004672|GO:0006468
Cca11g01940 400 PANTHER OS01G0588500 PROTEIN-RELATED 29 380 - -
Cca11g01940 400 PANTHER BNAC02G17010D PROTEIN 29 380 - -
Cca11g01940 400 ProSiteProfiles Protein kinase domain profile. 83 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01940 400 MobiDBLite consensus disorder prediction 371 400 - -
Cca11g01940 400 CDD STKc_IRAK 89 365 - -
Cca11g01940 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Cca11g01940 400 Gene3D Phosphorylase Kinase; domain 1 55 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01940 Cca-Chr11 44774576 44778729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01940 69 365 Glycoside Hydrolase AT3G07070 52.492 3.81e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca11g01940 PK_Tyr_Ser-Thr 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01940 - - gmx:100791844 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00208 09 4356776 4388125 Cca11g01940 11 44774576 44778729 ECH
Cca11g01940 11 44774576 44778729 Cca11g01940 11 44774576 44778729 ECH