Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01938 ATGGCAAATCCCAGCTTCTGGACTCAAGCAAACGCGCTTCTCCGCAAGAATCTCACATTCCAGAAACGGAACGTCAAAACCAACGTTCAGCTGGTGCTCTTCCCGGTCATCCTCTGCTTGCTGGTGTTCGCGCTCCAATGCGTAATCGACACGCAATTCGACAAGCCCGAGTTCAAGTGCGGCTGCGTCTGCAGAAACAACCGCACTCGCTGCGCCGACTCGGAGAAGGTGTGCGGGATACAGTATTCGGATCTCCTTCAGGCCGCCCTGTGTGCCATTCCGAAACCGCCTCAGTGGCCACCGCTCTTGCAGCTTCCGGAGCCTTCCAACCGGGCCGTGCGAACCGCTTCTCTTCCCTTTTCGGATTTCCCCGATGCCTCCTGCCGGATAACCGATTCCTGTCCCCTTACTATGCTCTTCACCGCAGAGAATCACTCCCTTGCACAAACCGTGACTGCAAGTATGTTTGGGAGTGCCTTGTCTATGAGTGACTACTATGATAGGGATATTTATGCGACCTCGGCGATGAATGTACTGGGATCTGATTCAGCGCCTGGGCAAAACAATTTTATTGAACCTGCTTTCTCTACGGGTCTTCCAATTTATTATCTACAAAGAAATTGCTCTGATGCGGAGAAGTTTGGACTCTCCTTGCCGATAGCAGACAATGAGGTCGAACTCAAATGTGCTCAGGCTCTAAATTTATGGCGCAATAGTTCTTCTGAGATCAACAGTGAGCTATATAAAGGTTATTATGGAGGTAACACAGAAGGACAAGTCAATGAGATAGTTTCAGCTTTTGATTTTCTAAATTCAAACGAGAATAGATATAATGTCAGTATATGGTACAACTCAACATACGGCAGACACACAAATGTGTTATTGAGGATTCCTCGCTCTATAAATCTGATATCAAATTCCTACCTGCAGTTTCTGCTTGGACCTGGAACCAAGGTGTTATTTGAGTTTGTAAAGGAAATGCCAAAGCCTGAGTCAAATTTTAGACTTGATCTATCTTCTCTTCTAGGCACTCTGTTTTTTACATGGGTCGTCCTGCAACTTTTTCCTGTTGTTTTGACATCACTAGTATATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCATATTGGATGATTTCATATGGTTATTTTCTTGCCATATCAGTAACCTACATGTTGTGTTTTGTGATATTTGGTTCACTTTTAGGATTAAAAATCTTCACAATCAATGACTACAGCACCCAATTCGTGTTTTATTTCATATATATCAACTTACAAATTGCACTGGCATTTTTGGTGTCTTCCATATTTTCAAATGTTAAGACAGCTACAGTAACTGCATATATAGGTGTCTTTGGAACCGGTTTATTAGGTGGCTTTCTTTTCCAATTCTTTGTTCAAAACACATCATTTCCAAGAGGGTGGATTATTGTTATGGAGTTGTATCCTGGGTTTGCTTTATATCGTGGGTTATATGAGTTTGCACAGTTTTCCTTTGAGGGGAGTATTTCGGGGACTGGTGGTATGAAGTGGCAGAATCTCAGTGAAAGCACCAATGGCATGAAAGAGGTCTTAATCATCATGTTGGCTGAGTGGATAGTGATTCTTTTTGCTGCCTTCTACATTGATCAAATACTGTCGTCAGGAAGTAGAAAAAGCCCTCTTTTCTTCTTGAAAGGATTTCAGAAAAAGACTCCTTTCCCGAATCTTGATACCCAAATGCAGGTGTCAAAAGTATTCTCTCAGATGGAGAAACGTGATGTTATCCAAGAGAAGGAGAAGGTGGAGGAACTGCTACGTGAACCCACTATTAATCATGCAATTGTATGTGACGACCTAAAAAAAGTCTATCCAGGGAGGGATGGAAATCCAGATAAATTTGCAGTGAGAGGGTTGTTCCTTTCAGTGCCTCAAGGGGAATGCTTTGGTATGCTAGGTCCCAATGGAGCTGGGAAGACCTCTTTTATCAATATGATGATTGGTCTCACAAAGCCAACCTCGGGTGCGGCATTTGTTCAAGGCTTGGACATAAGAACTCATATGGAGGGAATATATACTACCATGGGTGTGTGCCCACAGCATGACTTGCTGTGGGAAAGCTTGACAGGTAGAGAGCACCTACTTTTTTATGGCAGACTTAAAAATCTTAAAGGTTCAGTTTTGGCACAAGCAGTAGAAGAATCTTTGAAGAGTTTAAACCTTTTTCATGGAGGAGTTGCTGATAAACAAGCTCGAAAATACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCGTTGATTGGGGATCCCAGAGTTGTTTACATGGATGAACCAAGTAGCGGTTTAGACCCTGCCTCAAGAAAAAGCTTATGGAATGTTGTCAAGCATGCAAAACAGAACCGTGCAATCATTCTCACCACACATTCCATGGAAGAGGCAGAAGCCTTATGCGATCGATTAGGAATATTTGTGAATGGTAGCTTGCAGTGCGTTGGAAATCCAAAGGAGCTGAAGGCTAGATATGGAGGAACTTACGTGTTCACAATGACAACATCTTCGGATCATGAAAAAGATGTGGAGAACATGGTGCACCGACTCACCCCAAATGCCAACAAGATATACCATCTCTCTGGTACTCAGAAGTTTGAGCTGCCAAAAGAGGATGTTAGAATAGGGGATGTATTCCAAGCTGTTGATGCTGCAAAGAGAAACTTCACTGTTTCTGCATGGGGCTTAGTTGACACCACGTTGGAAGATGTATTCATTAAGGTTGCACGTGACGCTAATGCATTTGACACATTGTCATAA 2817 0.4313 MANPSFWTQANALLRKNLTFQKRNVKTNVQLVLFPVILCLLVFALQCVIDTQFDKPEFKCGCVCRNNRTRCADSEKVCGIQYSDLLQAALCAIPKPPQWPPLLQLPEPSNRAVRTASLPFSDFPDASCRITDSCPLTMLFTAENHSLAQTVTASMFGSALSMSDYYDRDIYATSAMNVLGSDSAPGQNNFIEPAFSTGLPIYYLQRNCSDAEKFGLSLPIADNEVELKCAQALNLWRNSSSEINSELYKGYYGGNTEGQVNEIVSAFDFLNSNENRYNVSIWYNSTYGRHTNVLLRIPRSINLISNSYLQFLLGPGTKVLFEFVKEMPKPESNFRLDLSSLLGTLFFTWVVLQLFPVVLTSLVYEKQQKLRIMMKMHGLGDGPYWMISYGYFLAISVTYMLCFVIFGSLLGLKIFTINDYSTQFVFYFIYINLQIALAFLVSSIFSNVKTATVTAYIGVFGTGLLGGFLFQFFVQNTSFPRGWIIVMELYPGFALYRGLYEFAQFSFEGSISGTGGMKWQNLSESTNGMKEVLIIMLAEWIVILFAAFYIDQILSSGSRKSPLFFLKGFQKKTPFPNLDTQMQVSKVFSQMEKRDVIQEKEKVEELLREPTINHAIVCDDLKKVYPGRDGNPDKFAVRGLFLSVPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGAAFVQGLDIRTHMEGIYTTMGVCPQHDLLWESLTGREHLLFYGRLKNLKGSVLAQAVEESLKSLNLFHGGVADKQARKYSGGMKRRLSVAISLIGDPRVVYMDEPSSGLDPASRKSLWNVVKHAKQNRAIILTTHSMEEAEALCDRLGIFVNGSLQCVGNPKELKARYGGTYVFTMTTSSDHEKDVENMVHRLTPNANKIYHLSGTQKFELPKEDVRIGDVFQAVDAAKRNFTVSAWGLVDTTLEDVFIKVARDANAFDTLS 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01938 938 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 4 938 IPR026082 GO:0016021|GO:0055085|GO:0140359
Cca11g01938 938 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 4 938 - -
Cca11g01938 938 Gene3D - 604 881 IPR027417 -
Cca11g01938 938 Pfam ABC transporter 641 782 IPR003439 GO:0005524
Cca11g01938 938 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 616 853 IPR003439 GO:0005524
Cca11g01938 938 Coils Coil 589 609 - -
Cca11g01938 938 Pfam ABC-2 family transporter protein 275 549 - -
Cca11g01938 938 ProSitePatterns ABC transporters family signature. 755 769 IPR017871 GO:0005524
Cca11g01938 938 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 849 IPR027417 -
Cca11g01938 938 CDD ABC_subfamily_A 620 841 - -
Cca11g01938 938 SMART AAA_5 646 830 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01938 Cca-Chr11 44752095 44763855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01938 620 864 Calmodulin-binding Proteins AT2G36910 24.219 1.55e-13 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01938 - - gmx:100792897 1612.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01938 11 44752095 44763855 Cca11g01938 11 44752095 44763855 ECH