Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01937 ATGGGGAAGTCACCAGGAAAATGGATCAAAACTGTACTGTTTGGGAAAAAGTCATCCAAATCAAATATTTCAAAAGGAAGAGAGAAGTTTGTTAATCAAAAAGAAGAAGTAATAGTTACTTCCAAGGTGCCAGAAACTGGTTTGGCTTTAGAACCAACTGCCAATACGATTGACAGGCATGAGGAAGACATAGAGCTGGAAAATAAAGAAGCAGAAAATGTTTTACCTGGCAATCAAGAAATAGACATAGTGGGATCTATCAATGAAGATGGTGCACTAGATCCAGAGAAAACGAGGAAGGATGAAGCAGCCACAAAGGCACAGGCTGCTTTCAGGGGTTATTTGGCTCGGAGAGCATTTAGGGCCCTAAAAGGCATAATAAGGTTGCAAGCACTCATCCGTGGACACTTGGTTAGGAGACAAGCTGTTGCTACATTGTGTTCTATGTATGGTATTGTCAAGTTTCAAGCACTTGTTCGTGGAGGAAGAGTTAGACAGACTAATGTTGGATCTGAAATCCGTGAGAAGCGCAATATATTGTGCCCTTTGGATGGCAAACTTGTGAAGTCAATTGCTATATCCACGAAAATTACAAAGCTGTCAGCAAATGCTTTCATTCGTAAGCTTCTTACTTCATCAACTACAGTAATGGCACTGCGGTTGCAATATGTTCCTGGTGATCCAAATTCAGTCTTAAGTTGGTTGGAGCGCTGGTCAGCATCTCACTTTTGGAAACCAGTTCCCCAACCCAAGAAAATTCGGGATACTAAGTCTCAAAGAAAGCATGGCAATAGTTCAATTGGAGATACTCAAATGAGCAAGTCAAAACGTACCAACAGGAAGCTTCCTACTGCAAGTTTGGACTCGGTCCCAGTGCAAGCAAATCCTGAATTTGAAAAACCAAAACGAAACGTAAGAAAAATTCCAAGCCAACCCTCTGATCCTGTGCAGGAAAATCCACAAAGTGAGCTTGAAAAGGTTAAACGTAACTTGAGAAAGGTTCATAACCCGGTTGTTGAGAATGCTGTACTATCAGAAGTTGAATCTGAGATGCCAAAGGAACATTTGGAAAAGGCAACACTTACCTCATGCCTTGCTGTTTCAGAACAAGAGGTCATTATTCCTACTGAAAAGATTAAGAAGGAAGCAACATTAACCGTTTCCAGTGTGCCAGATATAGAAACTACTCCAAGACTTTCAGTTACTAAGGAAGTGTCTGACACTCCAAGCAGTTATCAAGTGACTGTGGAATCAAAGCCATTGACTGAGATTACAACTAAAGATAAAAACATTTCTGACGAAGTTAAAAATGAACCCATAGATTTACCAGAGCCTATTTATAAAGATGAAAATTCGCACTTAACAAATGGAGATTTGAGTCACAAAGAAGACCCGATAGGCAGTGAAAACCAGAAACCAAACCGAAAAGCGTCAACTGTAGCAAAGCAGGACCGTGCAGAGAATGGTATACAGAATAGTCCAACATTACCGAGTTACATGGCAGCAACTGAATCTGCAAAGGCAAAGTTGAGGGCACAAGGATCCCCAAGATTTGGACAAGACAGAAGTGAACCAAACAACCAAACCCGGCGACATTCTCTGCCTTCCTCAACTAACAGCAAAATTAGTTCGCATTCACCCAGGACACAGAGACCAGTTCAATCAGGTGGCAAAGGGGGCCACAGAAGTGACAAAACCGTATCATCTTCTAGAGATGGGAATGGAAAGGTAATTCAAGCAGAGTGGAGGAGGTAA 1755 0.416 MGKSPGKWIKTVLFGKKSSKSNISKGREKFVNQKEEVIVTSKVPETGLALEPTANTIDRHEEDIELENKEAENVLPGNQEIDIVGSINEDGALDPEKTRKDEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCSMYGIVKFQALVRGGRVRQTNVGSEIREKRNILCPLDGKLVKSIAISTKITKLSANAFIRKLLTSSTTVMALRLQYVPGDPNSVLSWLERWSASHFWKPVPQPKKIRDTKSQRKHGNSSIGDTQMSKSKRTNRKLPTASLDSVPVQANPEFEKPKRNVRKIPSQPSDPVQENPQSELEKVKRNLRKVHNPVVENAVLSEVESEMPKEHLEKATLTSCLAVSEQEVIIPTEKIKKEATLTVSSVPDIETTPRLSVTKEVSDTPSSYQVTVESKPLTEITTKDKNISDEVKNEPIDLPEPIYKDENSHLTNGDLSHKEDPIGSENQKPNRKASTVAKQDRAENGIQNSPTLPSYMAATESAKAKLRAQGSPRFGQDRSEPNNQTRRHSLPSSTNSKISSHSPRTQRPVQSGGKGGHRSDKTVSSSRDGNGKVIQAEWRR 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01937 584 MobiDBLite consensus disorder prediction 454 470 - -
Cca11g01937 584 MobiDBLite consensus disorder prediction 425 448 - -
Cca11g01937 584 PANTHER IQ-DOMAIN 5-RELATED 1 572 - -
Cca11g01937 584 MobiDBLite consensus disorder prediction 247 323 - -
Cca11g01937 584 SMART iq_5 99 121 IPR000048 GO:0005515
Cca11g01937 584 SMART iq_5 122 143 IPR000048 GO:0005515
Cca11g01937 584 Gene3D - 96 147 - -
Cca11g01937 584 MobiDBLite consensus disorder prediction 519 553 - -
Cca11g01937 584 MobiDBLite consensus disorder prediction 425 584 - -
Cca11g01937 584 MobiDBLite consensus disorder prediction 263 291 - -
Cca11g01937 584 MobiDBLite consensus disorder prediction 484 500 - -
Cca11g01937 584 MobiDBLite consensus disorder prediction 248 262 - -
Cca11g01937 584 ProSiteProfiles IQ motif profile. 100 128 IPR000048 GO:0005515
Cca11g01937 584 PANTHER PROTEIN IQ-DOMAIN 31 1 572 - -
Cca11g01937 584 Pfam IQ calmodulin-binding motif 102 121 IPR000048 GO:0005515
Cca11g01937 584 Pfam IQ calmodulin-binding motif 124 141 IPR000048 GO:0005515
Cca11g01937 584 ProSiteProfiles IQ motif profile. 124 151 IPR000048 GO:0005515
Cca11g01937 584 Pfam Protein of unknown function (DUF4005) 483 563 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01937 Cca-Chr11 44736880 44745884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01937 1 584 IQD Protein Family AT1G74690 43.499 1.33e-121 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01937 - - gmx:100794636 1009.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00549 03 9371093 9377709 Cca11g01937 11 44736880 44745884 ECH
Cca06g00699 06 19169078 19174932 Cca11g01937 11 44736880 44745884 ECH
Cca11g01937 11 44736880 44745884 Cca11g01937 11 44736880 44745884 ECH