Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01930 ATGGAGCTTGCTTCGGAGAGATCTGGTGACGGAGGTAGTGGACTCAAGGAAGAAAAGAGAAGTGAGTACAGTGTTGGTGATGATGATGGTCATCATAAACAAGAGATTATTGTCGAGGAAGCACCCGTTGCTAACACCGAAAGATCCATACCGGAGGCTGGACCTAGCGCATCCACAAGCCAAAAGGAAAAGGTTGATGAAGAGCTTGAGACTACTAAAGCTGAAATGGGTGTGGTGAGGGAAGAAAATGAACGGTTAAAGATGAGTTTGAACAAAATAATGAATGAATATCGGACACTAGAAATGCAATTCCAAGACATACTTAAGCAAGGAACGAAGAAGAACGGTGATAAAGGAAATGAGAAGCATGAAGAAATATTAGAGGAATCGGATGATCTTGTTTCCCTCAGCCTTGGAAGGGTTCGGAGTATTCCAAAAAATGATGAGAAAATGAAGGTTTGTAAAGCATTGAAGGATGAAAAAGGAGACTTGAGTCTTGGACTAGAGTTCAAATTTGAAACATCAAAGTCGGGAAGCATAACTGAAGCTAATTTGACTAATCCAAGCCCTGAAAATAGCTATGAAGTGCCAAAGGAAGAAGCTGTGGAGACACTTAAGACAATGAGAGACACATGTACAGAGGATGAAGCTGCTCAGCAAAATCCTGCAAAGAAACCTCGAGTTTGTGTTAGAGCAAGATGTGACACTCCAACAATGAATGATGGATGCCAATGGAGGAAATATGGACAAAAGATTGCAAAGGGAAATCCTTGCCCACGAGCTTACTATCGATGCACAATTGCACCATCATGCCCAGTAAGAAAACAGGTGCAAAGATGTGCCGAGGACATGTCGATTTTAATCACGACCTACGAAGGGACCCACAACCACACTCTTCCACCTTCAGCCACAGCCATGGCATCCACAACTTCCGCAGCTGCTTCCATGCTCTTGTCTGGTTCATCAATCTCTTCAGCAACCACTGCCACCAATCTCGACAACCTCAACTTTTACCTATCAGATCATGCTTCCAAACCAAGGCAACTATACCTCTCCAACCCTGCCCTATCATCTTCACCTTCCCATCCAACCATCACTCTCGATCTCACTTCACCCCCACCCTCTTCCTCCTCCTCATCACCCTTTGTCAGATTCACTTCAACCTTCAACAACCAACCCAGATACCCCTCTTCCTCCAGCCTCAGCTTCAGCAACACTACTACCACTCAACCATATGGCCACAGGAACATGAACATCCTTAGCGGTGTCAACTTTGGAAGACAACAAGTGGAAAGTATCTACCAATCTTACATGCAAAAAATCAACAGCAACAACACAGCAGTGCCAGCTGATACCATATCTGCAGCAACGAAAGTCATCACAGCAGACCCCACTTTTCAATCGGCTTTGGCAGCAGCGCTTACTTCCTTTATTGGAAATCAAGGGGTCAGTGGTGTTGAAGAAAGTTTGGGTCAGAAAATGAAATGGGAAGAGGCGTTTCCAGCGTCTAATTCTTCGAAAGTGATCAATGGTTTTGCATCATCACAGACCAAAAGTTTGATGTTTCTACCTCCCTCGTCTTTGCCTTTTTCTACTCCCAAAAGTGCTTCTGCTTCTCCTGCTCATAATAGCGACGCCACCGATTAG 1647 0.4451 MELASERSGDGGSGLKEEKRSEYSVGDDDGHHKQEIIVEEAPVANTERSIPEAGPSASTSQKEKVDEELETTKAEMGVVREENERLKMSLNKIMNEYRTLEMQFQDILKQGTKKNGDKGNEKHEEILEESDDLVSLSLGRVRSIPKNDEKMKVCKALKDEKGDLSLGLEFKFETSKSGSITEANLTNPSPENSYEVPKEEAVETLKTMRDTCTEDEAAQQNPAKKPRVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAPSCPVRKQVQRCAEDMSILITTYEGTHNHTLPPSATAMASTTSAAASMLLSGSSISSATTATNLDNLNFYLSDHASKPRQLYLSNPALSSSPSHPTITLDLTSPPPSSSSSSPFVRFTSTFNNQPRYPSSSSLSFSNTTTTQPYGHRNMNILSGVNFGRQQVESIYQSYMQKINSNNTAVPADTISAATKVITADPTFQSALAAALTSFIGNQGVSGVEESLGQKMKWEEAFPASNSSKVINGFASSQTKSLMFLPPSSLPFSTPKSASASPAHNSDATD 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01930 548 MobiDBLite consensus disorder prediction 361 383 - -
Cca11g01930 548 Coils Coil 62 110 - -
Cca11g01930 548 SMART WRKY_cls 239 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca11g01930 548 SUPERFAMILY WRKY DNA-binding domain 232 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca11g01930 548 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 49 544 - -
Cca11g01930 548 MobiDBLite consensus disorder prediction 11 38 - -
Cca11g01930 548 MobiDBLite consensus disorder prediction 1 71 - -
Cca11g01930 548 Pfam WRKY DNA -binding domain 240 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca11g01930 548 ProSiteProfiles WRKY domain profile. 234 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca11g01930 548 Gene3D WRKY domain 224 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca11g01930 548 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 49 544 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01930 Cca-Chr11 44650725 44655503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01930 65 479 WRKY Transcription Factor Family AT1G18860 43.505 4.01e-83 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca11g01930 WRKY 9.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01930 - - pvu:PHAVU_003G192000g 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00548 03 9296910 9301564 Cca11g01930 11 44650725 44655503 ECH
Cca07g02129 07 49141645 49144930 Cca11g01930 11 44650725 44655503 ECH
Cca09g00205 09 4300531 4303643 Cca11g01930 11 44650725 44655503 ECH
Cca06g00704 06 19209173 19216232 Cca11g01930 11 44650725 44655503 ECH
Cca11g01930 11 44650725 44655503 Cca11g01930 11 44650725 44655503 ECH