Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01920 ATGCCGAGTGGAAGCACCTTTCCAAACATGACAACTTTCCTTcacaaccacaaccacaaccacaaccaAAACACTTGTCAACCTCTCCACTCTCTCTTCCTCTCTTCCTCTGCCACCCCTTTCCTGGGTTCGAGATCCATGGTGAGTTTCGAAGGAGAAGGAGGGAGCAAGGGGTCGTTGTTCCAGGGCTATGACCTGGAGGAGAATGGGGACGAGTACTTCCACCACCCCGAGAAGAAGCGCCGTCTCTCGGCCAACCAGGTTCAGTTTCTGGAGAAGAGCTTCGAGGAGGAGAACAAGCTGGAGCCCGACAGGAAAACCAAGCTCGCCAAAGACCTCGGCTTGCAGCCACGACAGGTTGCTATTTGGTTCCAGAACCGTCGCGCTCGCTGGAAGACCAAACAGCTCGAGAAGGACTACGACACTCTGCATGCAACCTTTCAGACTCTCAAAGCCAACTATGACCTCCTCCTCAAGGAGAAAGACAACTTAAAAGCTCAGGTGGCGAGTCTGACTGAGACGGTGCTTGCAAGAGGGATGCAAGAGCAAGAGTTGAAGCTGCAGGGTGAAAGTGAAACAAAGGGATCTGATATGAGTTCAAAGTGTGAAGGGTCCAAAGTGTCTTCTCATGTGGGGGGCTGTAAACAGGAAGATATTAGTTCTGGTAGGAGTGACATTTTGGATTCACACCCAGCTGATTCTTCTTATGCGTTTGACCCTGATCAATCCGACGTCTCACTCTCACAAGATGAACAAGATAACCTCACCCACAATCTCTACCCTTCCTACCTCTTTCCCAAGCTTGAAGAGGTCCATTACTCCGACCCTGCTCAAACTTCTTGTAATTTTGGATTTCCGGAGGAAGATCACGCCCTTTGGACCTGGGCCTACTAA 894 0.4911 MPSGSTFPNMTTFLHNHNHNHNQNTCQPLHSLFLSSSATPFLGSRSMVSFEGEGGSKGSLFQGYDLEENGDEYFHHPEKKRRLSANQVQFLEKSFEEENKLEPDRKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDTLHATFQTLKANYDLLLKEKDNLKAQVASLTETVLARGMQEQELKLQGESETKGSDMSSKCEGSKVSSHVGGCKQEDISSGRSDILDSHPADSSYAFDPDQSDVSLSQDEQDNLTHNLYPSYLFPKLEEVHYSDPAQTSCNFGFPEEDHALWTWAY 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01920 297 Gene3D - 72 142 - -
Cca11g01920 297 PRINTS Lambda-repressor HTH signature 105 114 IPR000047 GO:0003677
Cca11g01920 297 PRINTS Lambda-repressor HTH signature 114 130 IPR000047 GO:0003677
Cca11g01920 297 SMART HOX_1 77 138 IPR001356 GO:0003677
Cca11g01920 297 MobiDBLite consensus disorder prediction 182 250 - -
Cca11g01920 297 CDD homeodomain 79 135 IPR001356 GO:0003677
Cca11g01920 297 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Cca11g01920 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 22 294 - -
Cca11g01920 297 Pfam Homeodomain 79 132 IPR001356 GO:0003677
Cca11g01920 297 Pfam Homeobox associated leucine zipper 134 174 IPR003106 GO:0006355|GO:0043565
Cca11g01920 297 SUPERFAMILY Homeodomain-like 67 136 IPR009057 -
Cca11g01920 297 Coils Coil 147 174 - -
Cca11g01920 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 22 294 IPR045224 GO:0003700
Cca11g01920 297 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
Cca11g01920 297 MobiDBLite consensus disorder prediction 185 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01920 Cca-Chr11 44527960 44529960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01920 30 228 Homeobox Transcription Factor Family AT3G01470 45.933 9.57e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca11g01920 Homeodomain 9.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01920 - - ccaj:109807526 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01920 11 44527960 44529960 Cca11g01920 11 44527960 44529960 ECH