Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01913 ATGGGGGACAAGTCCCAGGTTTTGGAGGCTGTGTTGAAGGAAACTGTGGATTTGGAGAACATACCCATTGAGGAAGTTTTGGAGAATCTGAGATGTGGCAGAGAAGGTCTCAGCAGTGAGGCTGCTGAGGAGAGGCTCACCATTTTTGGTCACAACAAGCTTGAAGAGAAGAAAGAGAGCAAATTTTTGAAGTTCTTGGGATTTATGTGGAATCCTCTGTCATGGGTTATGGAAGCTGCTGCTATAATGGCAATTGCGCTTGCAAATGGAGGGGGGAAGGCGCCTGATTGGCAAGATTTTGTGGGTATCATTACCTTGCTTGTCATCAATTCAACTATCAGTTTCATTGAGGAGAACAATGCTGGTAATGCTGCAGCAGCTCTCATGGCTCGGCTCGCTCCAAAAGCAAAGGTTCTTCGAGATGGTAGGTGGAGTGAGCAAGATGCTGCGGTCCTGGTTCCTGGTGACATAATCAGCATCAAGCTTGGTGATATTATTCCAGCTGATGCTAGGCTTCTTGAAGGGGATCCTTTGAAAATTGATCAATCTGCACTTACGGGTGAATCACTGCCAGTGACAAAGGGTCCAGGCGATGGTGTTTATTCTGGTTCTACCTGCAAACAAGGAGAGATTGAAGCTGTGGTCATTGCTACCGGTGTTCATACCTTCTTTGGTAAAGCTGCTCATCTTGTGGATACTACCAATCAAGTTGGACACTTTCAAAAGGTCTTGACTGCAATTGGGAACTTCTGCATATGTTCAATTGCTGTGGGGATGGTAATTGAGATTATTGTTATGTATCCTATCCAAGATCGGCCGTATCGTCCTGGAATTGATAACCTCCTTGTGCTTCTTATCGGAGGAATTCCAATTGCCATGCCGACAGTTTTATCTGTGACCATGGCCATTGGTTCTCACAGGCTATCTCAGCAGGGAGCTATCACAAAGAGAATGACAGCCATTGAAGAGATGGCAGGCATGGATGTGCTTTGCAGTGATAAGACTGGGACTCTGACATTAAATAAGCTTACTGTTGACAAAAATCTTGTTGAGGTTTTTGCAAAAGGAGTGGATCCAGATACTGTTATTTTGATGGCGGCCAGAGCTTCAAGGCTTGAGAATCAAGATGCAATAGATACAGCCATTGTTGGGATGTTGGCTGATCCAAAGGAGGCACGTGCTGGTATACAAGAAGTACATTTTCTTCCTTTCAATCCTACGGATAAGCGGACAGCATTGACTTATCTCGATCAAGATGGTAAAATGCATAGAGTAAGCAAAGGTGCACCAGAACAGATCCTGAATCTTGCACACAATAAGGCAGACATTGAACGTAGAGTTCATTCAGTGATAGACAAGTTTGCCGAGCGTGGTTTAAGATCTCTTGCTGTAGCATACCAGGAAGTTCCAGATGGAAGGAAAGAGAGTGCTGGAGGCCCATGGCAATTTATTGGCCTTTTGTCTCTCTTTGACCCACCTAGGCATGATAGTGCAGAAACAATACGGAGGGCACTAAACCTTGGAGTAAATGTCAAAATGATTACAGGGGATCAACTAGCTATAGGAAAGGAAACAGGTCGTCGTTTGGGAATGGGTACCAACATGTATCCTTCATCAGCTTTACTTGGGCAGGACAAGGATGAATCCATTGCTGCCTTACCAATTGATGAACTAATAGAAAAAGCTGACGGATTTGCTGGTGTATTTCCTGAGCACAAGTATGAGATTGTGAAACGCTTGCAAGCTAGGAAACATATATGTGGAATGACTGGTGATGGAGTGAATGATGCACCTGCCCTGAAGAAGGCAGACATTGGTATAGCTGTTGCTGATGCTACTGATGCAGCTCGTAGTGCATCTGATATTGTTCTAACAGAACCTGGTCTAAGCGTTATTATAAGTGCTGTTTTGACCAGCCGAGCTATCTTCCAGAGAATGAAAAATTATACAATTTATGCAGTCTCTATTACAATTCGTATCGTGCTTGGTTTCATGTTGCTGGCTCTTATATGGGAGTTTGACTTTCCACCCTTTATGGTGCTTATCATCGCCATCCTAAATGATGGTACTATTATGACCATTTCAAAAGATCGTGTAAAACCATCTCCTTTGCCAGATAGCTGGAAGCTAGCAGAGATATTTACTACTGGCATTGTGCTTGGAAGTTACTTGGCAATGATGACAGTCATATTCTTTTGGGCAGCATACAAAACAAACTTTTTCCCGCGAGTGTTTGGAGTCTCAACTCTTGAAAAAAATGCTCATGATGATTTCCGAAAGCTTGCTTCAGCAATCTATCTTCAAGTGAGCACTATTAGTCAGGCTCTTATATTTGTAACTAGATCTCGAGGTTGGTCATACGTGGAGCGTCCTGGTTTATTGCTGGTGGTTGCTTTTATTGTTGCTCAATTGATTGCCACTTTGATTGCAGTGTATGCAAACTGGAGCTTTGCTGCAATTGAAGGAATTGGTTGGGGTTGGGCTGGTGTTATATGGATATACAACATAATATTCTACATCCCACTTGATATCATTAAATTTTTAATTCGTTATGCTTTGAGTGGTAGGGCTTGGGACCTTGTCATCGAGCAAAGGATTGCATTCACAAGGCAAAAGGACTTTGGAAAGGAACAACGTGAACTTCAATGGGCACATGCACAAAGAACATTGCATGGATTACAACCACCTGACACCAAATTCAATGAGCGCACACATGTCAATGAACTCAATCAGATGGCCGAAGAAGCTAAAAGGAGAGCTGAAATTGCAAGGTTGAGAGAACTTCATACACTAAAAGGTCATGTAGAATCAGTTGTGAGATTGAAGGGACTTGACATAGACACAATTCAGCAAGCATATACAGTCTAA 2868 0.4303 MGDKSQVLEAVLKETVDLENIPIEEVLENLRCGREGLSSEAAEERLTIFGHNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKAPDWQDFVGIITLLVINSTISFIEENNAGNAAAALMARLAPKAKVLRDGRWSEQDAAVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIAVGMVIEIIVMYPIQDRPYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFAKGVDPDTVILMAARASRLENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYLDQDGKMHRVSKGAPEQILNLAHNKADIERRVHSVIDKFAERGLRSLAVAYQEVPDGRKESAGGPWQFIGLLSLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWEFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTNFFPRVFGVSTLEKNAHDDFRKLASAIYLQVSTISQALIFVTRSRGWSYVERPGLLLVVAFIVAQLIATLIAVYANWSFAAIEGIGWGWAGVIWIYNIIFYIPLDIIKFLIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKFNERTHVNELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQAYTV 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01913 955 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Cca11g01913 955 PRINTS P-type cation-transporting ATPase superfamily signature 331 345 - -
Cca11g01913 955 PRINTS P-type cation-transporting ATPase superfamily signature 485 496 - -
Cca11g01913 955 PRINTS P-type cation-transporting ATPase superfamily signature 507 517 - -
Cca11g01913 955 PRINTS P-type cation-transporting ATPase superfamily signature 590 609 - -
Cca11g01913 955 PRINTS P-type cation-transporting ATPase superfamily signature 613 625 - -
Cca11g01913 955 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 853 IPR023298 -
Cca11g01913 955 CDD P-type_ATPase_H 36 847 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cca11g01913 955 ProSitePatterns E1-E2 ATPases phosphorylation site. 333 339 IPR018303 -
Cca11g01913 955 Gene3D - 134 218 - -
Cca11g01913 955 Pfam haloacid dehalogenase-like hydrolase 327 604 - -
Cca11g01913 955 SUPERFAMILY HAD-like 327 637 IPR036412 -
Cca11g01913 955 Coils Coil 906 926 - -
Cca11g01913 955 Gene3D - 343 490 IPR023299 GO:0000166
Cca11g01913 955 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Cca11g01913 955 Gene3D - 96 821 - -
Cca11g01913 955 SFLD C1.7: P-type atpase like 313 641 - -
Cca11g01913 955 PANTHER PLASMA MEMBRANE ATPASE 1 3 935 - -
Cca11g01913 955 PRINTS H+-transporting ATPase (proton pump) signature 447 465 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g01913 955 PRINTS H+-transporting ATPase (proton pump) signature 562 578 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g01913 955 PRINTS H+-transporting ATPase (proton pump) signature 590 606 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g01913 955 PRINTS H+-transporting ATPase (proton pump) signature 621 646 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g01913 955 PRINTS H+-transporting ATPase (proton pump) signature 766 787 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g01913 955 SUPERFAMILY Calcium ATPase, transduction domain A 134 231 IPR008250 -
Cca11g01913 955 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 103 365 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g01913 955 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 565 675 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g01913 955 SFLD p-type atpase 313 641 IPR044492 -
Cca11g01913 955 Gene3D - 904 955 - -
Cca11g01913 955 Gene3D - 328 627 IPR023214 -
Cca11g01913 955 PANTHER CALCIUM-TRANSPORTING ATPASE 3 935 - -
Cca11g01913 955 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Cca11g01913 955 Pfam E1-E2 ATPase 132 310 - -
Cca11g01913 955 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 36 812 IPR006534 GO:0008553|GO:0016021|GO:0120029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01913 Cca-Chr11 44438032 44444508 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01913 1 955 Primary Pumps ATPases AT5G62670 92.887 0.0 1791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01913 K01535 - gmx:100819324 1778.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00540 03 9116567 9122940 Cca11g01913 11 44438032 44444508 ECH
Cca11g01913 11 44438032 44444508 Cca11g01913 11 44438032 44444508 ECH