Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01910 ATGGGGAAGGCGCCTGATTGGCAAGATTTTGTGGGTATCATTACCTTGCTTGTCATCAATTCAACTATCAGTTTCATTGAGGAGAACAATGCTGGTAATGCTGCAGCAGCTCTCATGGCTCGGCTCGCTCCAAAAGCAAAGGTTCTTCGAGATGGTAGGTGGAGTGAGCAAGATGCTGCGGTCCTGGTTCCTGGTGACATAATCAGCATCAAGCTTGGTGATATTATTCCAGCTGATGCTAGGCTTCTTGAAGGGGATCCTTTGAAAATTGATCAATCTGCACTTACGGGTGAATCACTGCCAGTGACAAAGGGTCCAGGCGATGGTGTTTATTCTGGTTCTACCTGCAAACAAGGAGAGATTGAAGCTGTGGTCATTGCTACCGGTGTTCATACCTTCTTTGGTAAAGCTGCTCATCTTGTGGATACTACCAATCAAGTTGGACACTTTCAAAAGGTCTTGACTGCAATTGGGAACTTCTGCATATGTTCAATTGCTGTGGGGATGGTAATTGAGATTATTGTTATGTATCCTATCCAAGATCGGCCGTATCGTCCTGGAATTGATAACCTCCTTGTGCTTCTTATCGGAGGAATTCCAATTGCCATGCCGACAGTTTTATCTGTGACCATGGCCATTGGTTCTCACAGGCTATCTCAGCAGGGAGCTATCACAAAGAGAATGACAGCCATTGAAGAGATGGCAGGCATGGATGTGCTTTGCAGTGATAAGACTGGGACTCTGACATTAAATAAGCTTACTGTTGACAAAAATCTTGTTGAGGTTGGCGCTATTTGGCCTGCCGGGTTGGCGGGCTTGGCGGGGCGGGCTTGGCGGAGGCCTTTTCTTGGAGTACTAAAGTACACCATTGATATTGTTGTTTTTACTAATTATGGACACTCTAGTTATGGGACTTGGATTTGTGATCATGATGAGATTTTTTTTTCAACTTTAACCGGTTGGTATTAA 969 0.4489 MGKAPDWQDFVGIITLLVINSTISFIEENNAGNAAAALMARLAPKAKVLRDGRWSEQDAAVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIAVGMVIEIIVMYPIQDRPYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVGAIWPAGLAGLAGRAWRRPFLGVLKYTIDIVVFTNYGHSSYGTWICDHDEIFFSTLTGWY 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01910 322 Pfam E1-E2 ATPase 42 220 - -
Cca11g01910 322 Gene3D - 253 262 IPR023299 GO:0000166
Cca11g01910 322 ProSitePatterns E1-E2 ATPases phosphorylation site. 243 249 IPR018303 -
Cca11g01910 322 Gene3D - 44 128 - -
Cca11g01910 322 PANTHER PLASMA MEMBRANE ATPASE 2 264 - -
Cca11g01910 322 SUPERFAMILY Calcium ATPase, transmembrane domain M 4 235 IPR023298 -
Cca11g01910 322 PRINTS P-type cation-transporting ATPase superfamily signature 91 105 - -
Cca11g01910 322 PRINTS P-type cation-transporting ATPase superfamily signature 241 255 - -
Cca11g01910 322 PANTHER CALCIUM-TRANSPORTING ATPASE 2 264 - -
Cca11g01910 322 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 13 257 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g01910 322 SUPERFAMILY Calcium ATPase, transduction domain A 44 141 IPR008250 -
Cca11g01910 322 Gene3D - 6 237 - -
Cca11g01910 322 Gene3D - 238 252 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01910 Cca-Chr11 44378578 44382965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01910 2 262 Primary Pumps ATPases AT5G62670 95.019 1.61e-162 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01910 K01535 - ccaj:109807115 517.309