Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01908 ATGGGGCACAAAAAGCGAAACCCTACGCCGCGCTCCAAACAATCCGCGGCGGCTTCTCCGGCGGCGCAATCCGGCGTCGGCGGAGCCGCCAACGGTGCCAACTCGCCGGACACTTACGCCTGCAATGTTTCCGATCACAACCCTAGCAAGATCGAATTGGCTCCTCCCCAATCGGAGGGTTCCGATAACTCCACAATCAAGCTCGAGTGCGAGCGCGCACTCACCACGCATCGCCGCGGGAACCACACCAAGGCAATGAAGCTCCTCAAGGAGATTTGCGCCAGGGAGGAGGGCTCTCCCCACTCCGCCTTCGTCCACCGTGTCCACAGCCTCGTTTGCTTTAAAACAGCGACGGTCATCACGGACCCGAGCTCCAAGCAGCGGCATTTGAAGAATGCCGTCGAGTCGGCGCGCCGCGCCGTGGAGCTCACGCCGAATTCCGTCGAGTACGCCCATTTCCTCGCCACTGTGATGCTGGAGGCGGCGAATGAAGGGAAGGATTACGAGGAGGTGGTGCATGAGTGCGAGAGGGGGCTTGCCATTGAGAACCCTAGTGATCCTGCGAAGGAGACATTGCAGGATGAGAGCGAGCAGAAAGTTTCTTCCCCTGAAGAGCGGATAGCGCACGTGCAGAATGAGTTGAGGCAGCTCATTCAGAAGTCGAATATAGCTTCCTTGTCCTCTTGGATGAAGAACTTGAGCAATGGGGAGGAGAGGTTTCGGTTGATTCCGATAAGGAGGACTCCTGAGGACCCCATGGAGGTGAGGCTGGTTCAAACTAGACGGCCTAATGAGATCAAGAAGGTCACCAAGACGCCCGAGGAAAGGAGAAAGGAAATTGAAGTTCGAGTGGCTGCTGCAAGGCTGTTGCAGCAGAAGTCAGAGTCGCCACATTCGCCGAACGAAGGAGAGAGGGATGACAGGCAGTTGGATTCCTCTGCGGGATCCACTCAGAGGATTGGTAGTGATAGGAGGAGGCATGGGAATGCGAGAAAGAATGGCTTTACAGCTGAGAGGATGAAGTGGGTGTACGGATATTGGAATTCAGTGAGTATGGATATGAAGAAGGATTTTCTTAGGGTTAAAATTTGTGATCTCAAGTCACACTATGGGTCTTCCAACGATACTTTGCCGAACGATATATTATCAGAAGCTTTGTCTTATGCTGAGGTCAACAAAACGTGGAAGTTCTGGCTTTGCTGCAACTGTGAAAGGAAAGATTCCAACCCGGATTCTCATAGGCATCATGTTGTGCAGGAACACATGGGGAGTCTCTCGCCACAAATGCAGAGGCTTCTTCCCCAACATGTTGATAGTGAATGGGTTGAGATGATTCTTAATTGTTCTTGGAAGCCTCTGGATGTCATAGCTGCAGTTAGAATGCTTGATAATAAAGCAAAGTTCAGGAGTCCTTCATTTCCTGAGGATTTATACTTGGATCATCATACTCCGGACTATAATGATTGTTTCAAAGATGCAGGCAGCTCTTACATTGAGAAGGAAAGTCCAGGGGACAGTCTTCGTAATTATTCAGCCGAATGCAACAACTATTGTAAAATTATAGAAAGTGATGTTAGAGGTGGTGTTGAAGATCAACTATCCATGGCTAATCCCATTATTGATTGTTGGCCAGTATCTGATGACACTGAGCGTGCAAAACTTCTGGAGAAAATTCATGCCAAGTTGGAGGTTCTTATTAGGCACAAATGTCTTGCTGCTAGTCATCTTAACAAGGTCATACAGTTTACGATGGGGGAGATACAAGGTCTTGCTGCTGGTTCTCAACTTCTCAATCATGGCGTGGACCAAACACCAATGTGTATATGCTTTCTGGGAGCTTCACAGCTCAAGACAATTTTCCAATTTCTGCAGGAAATATGTCATGCTTGTGGGGTGGAGAGGCCTGCTGATAAAGGCAGTAGTCCCACAAATGATTTGCTCAATATCACTCAAGGTCCTGAGATTAAAGACAAGATTGTACTTGATGGAGATGCATCATGCCTCCATCTGGACGAGTGTTTACTACAAGGACAAGTCACCCCTGGTACAGCTCAGGGGCCTGTTTTGGAAGATATAACCACCTCAAGCTCACCTGATGGAATTTCATGCTATAATGATGCGTTGCTGTCCTGGATATTTTCAAGTTCGCCTATTGGGGATCAATTGACATCATGGCTGCGGACTAGAGAAGATAAAATAAATAAAGGAAAGGAAATTGTCCAGCTACTCGAGAAGGAGTTTTATCACCTACAGGGGTTATGTGAGAAGAAGGGTGAGCGTATAAGTTATGAGGAAGCACTGCAAACAGTAGAGGATCTTTGTCTCGAAGAAGGTAAGAAGAGGGAAACGGTTGGTGAATTTGTCCAGCGAAGCTATGAATCTGTCTTGAGAAAACGGAGAGAAGAGCTCATTGAGAGTGAGAATGAAATGATGTATGTCAGCAATAGGTTTGAGTTGGATGCTATATCAAATGTTTTGCAAGAAGCAGAAGCAAGGAATGTTAATCAATTTGGCTATGAGGAAACTTATGCTGGTGTGACTTCTCAGTTATGTGACTTGGAATCTGGTGAAGAAGATGAATGGAGAATGAAGGACTACTTGCATCAAATGGATGGTTGTATAGAAAACGCAATTCAGAAACTGAAAGAGCATTTATCTATAGAGCTTAGCAAAACTGATGCCCGAATAATTAGAAGTTTTACATCGATGCAACAAATGGAATTCAAGCTTGGACCTGTTTCTGCTAATGATTATCGAGCAATATTAGTGCCTCTAGTGAAGTCCTACCTAAGGGCACTTTTGGAAGATTTGGCTGAAAAGGATGCAAAAGAGAAGTCTGATGCTGCAAGTGAAGCCTTTTTGGCCGAACTTGCACTTGATTCCAAGAAGGCTGTTAAGGGGGGAAGTGAGAGCACAAGACATGTCGAGAAGACAAAAGATAAGAAGAAGAATAAAGATCACAGAAAAGCAAGAGATTTGAAGTCCTTAAGTGGTCATGTGCAGTTCTCACCTCGACCTACAACTCCTGATTCCAATCTAATTCCACCTGAAAGTGACTTCCCAGATCATGAGGATGTTTCTATGATCGATGGTGACGTGGAACAACTTGAAGAGGAATTTAGACGTAAAATTGAGCTAGAAGAGGAGGAAAAAAAGCTTGAAGAAACTTTGGAATTTCAACGAAGGATAGAAAATGAAGCCAAACAGAAGCACCTTGCAGAGCAACAGAAAAAATCATCTGGGTTATACTCAGAAGAAGTGGCAGACAAACTTCAAGATTGTCAAACAAAGGCGGATGATGATCTACCAGATGCACATGAACATGTAAGAGTACCTGTGCAGGAGCAGTTGGTAAAAGAGAACGGATCACGAAGTAATCTGGATGGTGTGCTTACACCCAGAGCAAATGGTTCCATGGTTAATTATTTGCATCAGTCCAAAGTTAAACAATatgatctgcctaatggagttgttccagttccagagaatgGTCTACCTTTGTCTGGGCGTACAGGTAAAAAACATAAACGGCAGAAGAATTCTTCCAGACTGGTTGATGGAAAGTTTGAATCTATCTCATCAGAAAAAGAGAACACTGAGGATACACATACCGATTATTGCTCAAGAGAGCAATTCAAATTTAATAACAATCAAGATGCTAATAATGTGAGGGAAAACAATGCATCAGATGCAGAGGAGGAAAGATTTCAAGCTGATCTTAAAATTGCCGTACGCCAAAGCCTGGACACATATCAAGCTCGTGGAAATTTATCTTCGGTTTCCAGTTTAAGCATGTCACAAAGAGCTTCCTCACAGGTAGATAGTGTCAATTGTCCTACTGTGGATGACTCAACCGATAATGTGAATGGGGCGACTTTGCTTGGTACTGGACTGAAGAATGAAGTGGGTGAATATAATTGTTTTCTCAATGTTATTATACAGTCATTGTGGCATTTAAGACGCTTTCGGGTGGAATTTCTTGGCAGATCAAGATCAGAGCATGATCATGTGGGTAGTCCTTGCGTTGTCTGTGCATTGTATGAAATATTCACTGCACTGGATATTGCATCAAAGGATTCACGGAGAGAGGCAGTTGCACCTACATCTCTGCGGATAGCTCTTAGCAACCTGTATCCTCACAGTAATTTCTTCCAGGAGgctcagatGAATGATGCTTCTGAGGTACTGGCGGTGATATTTGACTGCCTTCATCGATCCTTTACTCGTGGTTCAAGTGTTTCTGATGCAGAATCAGCTGAAAGCATCTGTATGGGGTCGTGGGACTGTGCAAATGGTAGTTGTATAGCACATTCACTTTTTGGAATGAACATTTTTGAACAAATGAACTGCTATCACTGCGGCCGTGAATCCAGACATATGAAATATACTTCCTTCTTTCACAATATAAATGCCAGTGCCCTCCGAACAATGAAGGTAATGTTTGCTGAAGCTTCATTTGATAAGCTTTTGAATCTTGTGGAGATGAACCATCAGTTGGCTTGTGATCTAGAAGCTGGTGGCTGTGGCAAGCTCAACCACATCCATCACTTTCTTTCAACTCCACCCCATGTTTTTATGACTGGTAACTCAGTTGTTGCTTTTGGAATATTGTTGACAATTTTTATATGCTTTTTTGGTATTTTTTTTCAAATGTTTTTTATTCACAGTCCTAGGTTGGCAAAATACATGTGA 4692 0.4399 MGHKKRNPTPRSKQSAAASPAAQSGVGGAANGANSPDTYACNVSDHNPSKIELAPPQSEGSDNSTIKLECERALTTHRRGNHTKAMKLLKEICAREEGSPHSAFVHRVHSLVCFKTATVITDPSSKQRHLKNAVESARRAVELTPNSVEYAHFLATVMLEAANEGKDYEEVVHECERGLAIENPSDPAKETLQDESEQKVSSPEERIAHVQNELRQLIQKSNIASLSSWMKNLSNGEERFRLIPIRRTPEDPMEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSESPHSPNEGERDDRQLDSSAGSTQRIGSDRRRHGNARKNGFTAERMKWVYGYWNSVSMDMKKDFLRVKICDLKSHYGSSNDTLPNDILSEALSYAEVNKTWKFWLCCNCERKDSNPDSHRHHVVQEHMGSLSPQMQRLLPQHVDSEWVEMILNCSWKPLDVIAAVRMLDNKAKFRSPSFPEDLYLDHHTPDYNDCFKDAGSSYIEKESPGDSLRNYSAECNNYCKIIESDVRGGVEDQLSMANPIIDCWPVSDDTERAKLLEKIHAKLEVLIRHKCLAASHLNKVIQFTMGEIQGLAAGSQLLNHGVDQTPMCICFLGASQLKTIFQFLQEICHACGVERPADKGSSPTNDLLNITQGPEIKDKIVLDGDASCLHLDECLLQGQVTPGTAQGPVLEDITTSSSPDGISCYNDALLSWIFSSSPIGDQLTSWLRTREDKINKGKEIVQLLEKEFYHLQGLCEKKGERISYEEALQTVEDLCLEEGKKRETVGEFVQRSYESVLRKRREELIESENEMMYVSNRFELDAISNVLQEAEARNVNQFGYEETYAGVTSQLCDLESGEEDEWRMKDYLHQMDGCIENAIQKLKEHLSIELSKTDARIIRSFTSMQQMEFKLGPVSANDYRAILVPLVKSYLRALLEDLAEKDAKEKSDAASEAFLAELALDSKKAVKGGSESTRHVEKTKDKKKNKDHRKARDLKSLSGHVQFSPRPTTPDSNLIPPESDFPDHEDVSMIDGDVEQLEEEFRRKIELEEEEKKLEETLEFQRRIENEAKQKHLAEQQKKSSGLYSEEVADKLQDCQTKADDDLPDAHEHVRVPVQEQLVKENGSRSNLDGVLTPRANGSMVNYLHQSKVKQYDLPNGVVPVPENGLPLSGRTGKKHKRQKNSSRLVDGKFESISSEKENTEDTHTDYCSREQFKFNNNQDANNVRENNASDAEEERFQADLKIAVRQSLDTYQARGNLSSVSSLSMSQRASSQVDSVNCPTVDDSTDNVNGATLLGTGLKNEVGEYNCFLNVIIQSLWHLRRFRVEFLGRSRSEHDHVGSPCVVCALYEIFTALDIASKDSRREAVAPTSLRIALSNLYPHSNFFQEAQMNDASEVLAVIFDCLHRSFTRGSSVSDAESAESICMGSWDCANGSCIAHSLFGMNIFEQMNCYHCGRESRHMKYTSFFHNINASALRTMKVMFAEASFDKLLNLVEMNHQLACDLEAGGCGKLNHIHHFLSTPPHVFMTGNSVVAFGILLTIFICFFGIFFQMFFIHSPRLAKYM 1563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01908 1563 MobiDBLite consensus disorder prediction 298 312 - -
Cca11g01908 1563 MobiDBLite consensus disorder prediction 289 332 - -
Cca11g01908 1563 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1296 1563 IPR028889 -
Cca11g01908 1563 MobiDBLite consensus disorder prediction 965 1025 - -
Cca11g01908 1563 Gene3D Tetratricopeptide repeat domain 60 217 IPR011990 GO:0005515
Cca11g01908 1563 MobiDBLite consensus disorder prediction 188 203 - -
Cca11g01908 1563 Coils Coil 1033 1070 - -
Cca11g01908 1563 MobiDBLite consensus disorder prediction 182 203 - -
Cca11g01908 1563 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1 1527 - -
Cca11g01908 1563 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1527 - -
Cca11g01908 1563 SUPERFAMILY Cysteine proteinases 1296 1524 IPR038765 -
Cca11g01908 1563 MobiDBLite consensus disorder prediction 1162 1204 - -
Cca11g01908 1563 MobiDBLite consensus disorder prediction 1000 1014 - -
Cca11g01908 1563 MobiDBLite consensus disorder prediction 28 45 - -
Cca11g01908 1563 MobiDBLite consensus disorder prediction 1 64 - -
Cca11g01908 1563 Gene3D Cysteine proteinases 1280 1526 - -
Cca11g01908 1563 Pfam Protein of unknown function (DUF627) 73 183 IPR006866 -
Cca11g01908 1563 MobiDBLite consensus disorder prediction 1189 1204 - -
Cca11g01908 1563 Pfam Protein of unknown function (DUF629) 346 876 IPR006865 -
Cca11g01908 1563 Pfam Ubiquitin carboxyl-terminal hydrolase 1297 1525 IPR001394 GO:0004843|GO:0016579
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01908 62 1525 C2H2 Transcription Factor Family AT3G47890 54.411 0.0 1484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01908 - - gmx:100799759 2564.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01908 11 44353337 44362978 Cca11g01908 11 44353337 44362978 ECH