Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01907 ATGACCCTTAAGGGCGGCACAACCCAAGCATGTGCAGCATGCAAACACCAGAGAAGAAAGTGCACTTCTGAGTGCCTTCTTGCACCATTTTTCCCTGCAGACCAACCTAAGGTGTTTCTCAATGTTCACAAGCTTTTTGGAGTGAGCAACATTGTAAAGATATTGAAGATATTGGAGCCTAGTCAGAAGAAAATAGCCATGGACTCTATCATCATTCAAGCAAATTATAGAGATAAGTATCCTGTGCATGGCTGTTGGGAAGAGATTTGTAGGCTACAATACCAAATATGGGTTATGGAAGAAGAGCTTCATGCAGTGTATCAACAGCTTGAAATATGTAGACAACAACACCATCAAGGTCCTTCTATGCACGATGATGTGGCTTCACAATTAGAATTGGGCATGACACCTCGTACTAGTAATGCATTACCATTATTTAATCATCATACTccacaaccacaaccacaaccccacacttacaacACTGTGGCTTTGTCTGTGTCACAACAACAACAACATTCCTACTCCAACAGCAACAGTGTGGATTATAATTCTCTCTACTTGGACTCCAAGGATAATACAACAAATCCTTTGTGGGTTCAGTATTCCTATGCAAATAATAATAGCAATTCTGTAGGAATGGACACTCAGTTCTCCTCACAGCCACTGGCCATTCAACAAAATGTTGTTGAAGATTATGATGAGATTCATCCAATTTTTGATTCAGTTGATGATAGACAATCATACATTTATTCCAAGGAGGCTTATGAGTCAAGTTCAGAAGAGTCACTGAAAGATATGAGAAAGTGCACTGATCATCAAGCTGTCCCCTCTCCCCTCCACATAAAAAAAGATGTACTAGGTTTCCTTTTTGGGTTCTTTTATTCTTGGACTATAGGGTGGAGAGGTGGGGTACATGCGACGCTTAAGTCAGGAAGTGATTTTGATCGATAG 954 0.3878 MTLKGGTTQACAACKHQRRKCTSECLLAPFFPADQPKVFLNVHKLFGVSNIVKILKILEPSQKKIAMDSIIIQANYRDKYPVHGCWEEICRLQYQIWVMEEELHAVYQQLEICRQQHHQGPSMHDDVASQLELGMTPRTSNALPLFNHHTPQPQPQPHTYNTVALSVSQQQQHSYSNSNSVDYNSLYLDSKDNTTNPLWVQYSYANNNSNSVGMDTQFSSQPLAIQQNVVEDYDEIHPIFDSVDDRQSYIYSKEAYESSSEESLKDMRKCTDHQAVPSPLHIKKDVLGFLFGFFYSWTIGWRGGVHATLKSGSDFDR 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01907 317 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Cca11g01907 317 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Cca11g01907 317 PANTHER LOB DOMAIN-CONTAINING PROTEIN 27-RELATED 4 270 - -
Cca11g01907 317 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01907 Cca-Chr11 44345667 44349107 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01907 1 255 AS2 family AT3G47870 38.033 1.40e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca11g01907 LOB 8.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01907 - - lang:109357116 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01907 11 44345667 44349107 Cca11g01907 11 44345667 44349107 ECH