Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01906 ATGGACGACGGCGATTCTTCCCTGTCCGATAAAGATGAGGAAGACGTGGCGGACATTCTGTCGCGGATTCCAATCGTCGATGCTCCCATACTCTTTTTCGTTTGTTTCCACAAGGCTTTTCGCTCTGAACTCGATCACCTTCGTCGCTTGGCGGAAACGGCGTCGTTGGAGGACGAGCCACGCCGTTGCCGACAATTCATCCTTCACCTTCACCGTAGGTTCCAGTTTCTGAGACTAGCTCTTAAGTATCATTGTGCTGCGGAAGACGAGGTTATCTTCGCTGCACTGGATACGCATGTGAAAAATGTTGTATGTACATATTCCCTTGAACATAACAGCACAAATGACCTTTTTGATTCCATCTTTCACTTCTTGGATGAGCTGATGGTTCCTAAAGAAAATATTTCCAAGCTGTTCCAAGAACTTGTGTACTGCATGGGCATCTTGCAAACTTCCATCTACCAACACATGCTGAAAGAAGAAAAGCAGGTTTTTCCTCTGTTGATGCAGAAATTATGTACTAAAGAACAGGCCTCGCTTGTGTGGCAATTCATATGTAGTGTTCCTATAACGTTGCTAGAGGAAGTATTGCCATGGATGGTATCCTTCCTTTCTTCAAACAAACAATCAGAAGTTACCCAGTGTTTATCTGAAATTGCACCAATGGAAAAAGCACTGCAAGAGGTTTTGGTTTCTTGGCTTAGAAGCAACAACCAAACCTTCACCAACACCTATTTTCAGATTGAGGAATTTCAAGATGCTAATGGATTCCTACATATAGAAAGATCACTTGAGCTGAGTTATTGTAATAGGAACTCCGAAGAAATTTCAAGTCGGATAAAAGTGAATGCTCAAGAAATAGAAGATGGGGCTAATCAGGTTAATGTCCTTCATCTTTGGCATAATGCCATCAAGAAAGATTTGAGAGAAATTCTGAAAGAACTTTATCTACTAAGAAAATCCAGCTGTTTTCAGACTTTAGACTCAATACTAGTCCAACTAAAATTCTTTGCCGATGTCCTCATCTTCTACAGCAATGCTCAGAAGAAATTCTTTCATCCTGTACTGAATAAACATGCTTATGACTGGTTGTCCAAGTCTATTGATCAATTTCTTGGTGAAAGTAACATTGAAGATATACAACAGTTGCTATTCTATAACCCAGAAAGTGGAATACCTTTGAGCAAATTTGTAGAGAAGATTTGTCAAAAACTTGAATCATTTGTTTCAGGAGTCAACAAACAATTTGCTTTTCAAGAAAATGAGGTATTTCCTATCATTAGAAAGAACTGCAGAACTGGAATGCAAGAGAGACTTCTAAACTTGAGCCTGCACATGATGCCTCTTGGGTTACTAAAATGTGTTATAACTTGGTTTTCAGTTCACTTGTCTGAAAAAGAGTCCAGGTTCATTCTCTATTGCATAAAAAAAGGAAACATTTCTGTCTGTAAAGCTTTTTCATCACTGTTACATGAGTGGTTCCGCATTGGTTATTCAGGTAAAACCTCTCTTGAAAAATTCAGACAAGATTTGCAACATATGTTCAAAAAGAGATGCTCTTTTTTACCTGAACAAATGAAGGAAGCTCGTGGATTTTCTTTCTTAAATTCTGAGAAGCAGCTTCATAAAGTCTCTGGCCAGAATTGTTTGTCCTATTCCTCCTTTTCTGGATCCAGTAATATAAACAAGTATGAGACACCATACTCCACAGGAATTAGTCTGCACATATTTTTTCCTGCCACGGTTGTGAAGTTAAATCAGCATCCTGCATTACATGTAGAAAATCGTTCTTCTATTTCCTTTCTTGATGATCCAAAACCTATTGACCTAATATTTTTCTTTCACAAGGCTATCAAGAAAGATTTGGAGTACCTAGTTCTTGGCTCAGCTCAGTTAGAAGAAAATGATAAGTTGCTTATGGATTTCAAAAAACGATTCCATCTCATATATTTTCTTCATCAAATCCATAGTGATGCAGAGGATGAGATAGTTTTTCCAGCTTTGGAGGCAAGAGGTAAACTCAAAAACATTAGCCATGCCTATACCTTTGATCACAAACATGTTGTTGAGCACTTCAATAAAATATCTCGCATCCTTGATAAGATGTCTGGATTACATCTTTCAGTTTCTACAATTGATTCAAATATAAGGGAGAAGGGAATGCTAAGGTATCACCATTTATGCAGGAAGCTGCAAGAAGTGTGCAAATCAATGCATAATTTACTTTCTGATCACATAAACCGTGAGGAAATAGAACTTTGGTCTATAATTAGAGATTTCTTCACAAATCAGGAGCAAGGGAAGATCATAGGATGCATGCTTGGAAGAATAAGAGCAGAAATATTACAAGATATGATACCTTGGCTAATGGCATCTTTAAAACAGGAAGAACAACATGTTTTAATGTACTTATGGTCCATGGCTACTAAAAATACAATGTTTGACGAATGGTTAGTTGAATGGTGGGATGGGTACAGTTTAACTAAGGTAACAGAGGGATCAAATGATGCCCCTCTACAACCTGTTGAGCCACTGGAGATTATATCCAAATATTTATCTGAAGAAATTCTAAATGAATTACAAGAAGAATTATCTGCCAACAAAAGCGTAAATTTTTTGCAGAAGGATCATATTGGGGATAATTTTGAGCTGTCTGACTACAAGTTTGATGATAAAGTTAACGTTCATAATGCAGAAAAAAATATTAATCAATGTTCAGAACACACAACTAAATTTCATGACAATAACAAACATGCTTGCAATGAAGTAACGGATATCACAAATCCGGTAAACAATGAAGGTAAGTCTTCTCAACTTTGTGACAAGTCTGGGCGTTATGATCGACTCTTGAAATTGAGTCAAGATGATTTGGAGATGGCAATAAGAAGGGTGTCTCGTGACTCTTGCTTAGATCCTCAGAAAAAGTCATACATAATACAGAACCTACTGATGAGCCGTTGGATTATTAGACAGCAGATCACTTCTACAGAAGTCAACATAAAAAATGATGAACTGGAATTTCCTGGGAAGCATCCATCTTACAGGGACCCTCTTAAACTAATCTACGGTTGTAAACACTACAAGAGGAGCTGTAAGCTTTTTGCTCCTTGTTGCAACCAACTTCATACCTGCATACATTGCCATAACGAGGATTCAGATCATTCAATTGACAGAAAATCTATCACAAAGATGATGTGTATGAAGTGCTTGATGATTCAACCAATCAGCGCCACATGCTCAACAGTTTCTTGTAAATTATCCATGGCAAAGTATTACTGCAGGATCTGCAAATTATTTGATGATGATAGGGAAATTTACCATTGTCCTTATTGTAACCTGTGCCGAGTTGGAAAGGGTTTGGGTGTAGACTACTTTCACTGCATGAGTTGCAATGCGTGTATGTCTCGTTCTCTTATGAATCATACATGCAGGGAGAAACATTTAGAGGATAACTGTCCAATTTGTCATGAATATATCTTCACATCCTGCTCTCCAGTAAAAGCCCTCCCATGTGGTCATGTGATGCACTCAAAATGTTTTCAGGTATATTTTAAGATGTTAGATGCGTTATTGGCTGAAGAGAAAATTTCTGATGAGATTTCGAGTCAAACTCAGGAGCTGCAGGTTGTATTATGCAATGACTGTGAAAAGAAAGGAGCGGCTTCCTTCCACTGGCTCTACCACAAATGTCCTAGCTGTGGTTCTTACAACACTAGACTTCTATGA 3726 0.38 MDDGDSSLSDKDEEDVADILSRIPIVDAPILFFVCFHKAFRSELDHLRRLAETASLEDEPRRCRQFILHLHRRFQFLRLALKYHCAAEDEVIFAALDTHVKNVVCTYSLEHNSTNDLFDSIFHFLDELMVPKENISKLFQELVYCMGILQTSIYQHMLKEEKQVFPLLMQKLCTKEQASLVWQFICSVPITLLEEVLPWMVSFLSSNKQSEVTQCLSEIAPMEKALQEVLVSWLRSNNQTFTNTYFQIEEFQDANGFLHIERSLELSYCNRNSEEISSRIKVNAQEIEDGANQVNVLHLWHNAIKKDLREILKELYLLRKSSCFQTLDSILVQLKFFADVLIFYSNAQKKFFHPVLNKHAYDWLSKSIDQFLGESNIEDIQQLLFYNPESGIPLSKFVEKICQKLESFVSGVNKQFAFQENEVFPIIRKNCRTGMQERLLNLSLHMMPLGLLKCVITWFSVHLSEKESRFILYCIKKGNISVCKAFSSLLHEWFRIGYSGKTSLEKFRQDLQHMFKKRCSFLPEQMKEARGFSFLNSEKQLHKVSGQNCLSYSSFSGSSNINKYETPYSTGISLHIFFPATVVKLNQHPALHVENRSSISFLDDPKPIDLIFFFHKAIKKDLEYLVLGSAQLEENDKLLMDFKKRFHLIYFLHQIHSDAEDEIVFPALEARGKLKNISHAYTFDHKHVVEHFNKISRILDKMSGLHLSVSTIDSNIREKGMLRYHHLCRKLQEVCKSMHNLLSDHINREEIELWSIIRDFFTNQEQGKIIGCMLGRIRAEILQDMIPWLMASLKQEEQHVLMYLWSMATKNTMFDEWLVEWWDGYSLTKVTEGSNDAPLQPVEPLEIISKYLSEEILNELQEELSANKSVNFLQKDHIGDNFELSDYKFDDKVNVHNAEKNINQCSEHTTKFHDNNKHACNEVTDITNPVNNEGKSSQLCDKSGRYDRLLKLSQDDLEMAIRRVSRDSCLDPQKKSYIIQNLLMSRWIIRQQITSTEVNIKNDELEFPGKHPSYRDPLKLIYGCKHYKRSCKLFAPCCNQLHTCIHCHNEDSDHSIDRKSITKMMCMKCLMIQPISATCSTVSCKLSMAKYYCRICKLFDDDREIYHCPYCNLCRVGKGLGVDYFHCMSCNACMSRSLMNHTCREKHLEDNCPICHEYIFTSCSPVKALPCGHVMHSKCFQVYFKMLDALLAEEKISDEISSQTQELQVVLCNDCEKKGAASFHWLYHKCPSCGSYNTRLL 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01906 1241 Pfam Zinc-ribbon 1181 1239 IPR039512 -
Cca11g01906 1241 CDD Hr-like 609 754 - -
Cca11g01906 1241 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 21 1241 - -
Cca11g01906 1241 CDD Hr-like 36 166 - -
Cca11g01906 1241 Pfam Hemerythrin HHE cation binding domain 37 168 IPR012312 -
Cca11g01906 1241 Gene3D - 1207 1241 - -
Cca11g01906 1241 ProSiteProfiles Zinc finger CTCHY-type profile. 1088 1151 IPR017921 -
Cca11g01906 1241 CDD RING-H2_Pirh2 1151 1186 - -
Cca11g01906 1241 SUPERFAMILY CHY zinc finger-like 1015 1080 IPR037274 GO:0008270
Cca11g01906 1241 Pfam CHY zinc finger 1024 1098 IPR008913 GO:0008270
Cca11g01906 1241 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 21 1241 - -
Cca11g01906 1241 SMART ring_2 1152 1233 IPR001841 -
Cca11g01906 1241 ProSiteProfiles Zinc finger CHY-type profile. 1017 1086 IPR008913 GO:0008270
Cca11g01906 1241 Gene3D nmb1532 protein domain like 603 775 - -
Cca11g01906 1241 Gene3D nmb1532 protein domain like 29 186 - -
Cca11g01906 1241 SUPERFAMILY Zinc hairpin stack 1089 1144 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01906 Cca-Chr11 44323774 44336730 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01906 28 903 C2H2 Transcription Factor Family AT3G18290 31.497 1.76e-126 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01906 K16276 - gmx:100802706 2227.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01906 11 44323774 44336730 Cca11g01906 11 44323774 44336730 ECH