Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01903 ATGTCCAACGGATCTTCTCCTTCGCGTCCCGCCCAACGATCCTCGCCGGAGCCGGAGCCGGAGCCCAATCCCCCAAACCACGACTCCGATTCAAAGGAGGAAACCGCCGCCGCTCCTCCCGTCGTCACCAGGAGCACCCGCCCGTCCCGCGCCTGCACCATGCGCGCCGCCTCTCGACTCCATTCCTCGCCGGCGAAGAAGGAGGTCtcgccgccgccgccgccctcgcaatgcagcaagatcgtgacggcgctggtggagccgccgtcgccgtcgcggttgccgCGGTGGGGCCTGCGGGCCATGTGGGAGTTCGCTTCCGTGCTGAATTTCTTGCATCTGTTTAGGCCTCTTTTGAATATCTCGTTGGAATTCTCTGCGGAAGAGTTCGAGACAGCTCTTCTTACTCCGAACGATACTTTGTTTCATATTCACATGCCTTTGCTAAAGGCAATCCCTCCTATTACACGAATGGCACTCACACGTGATACTTGGATAACTGTATTATGCAGGAAGTTGAGAGATTGGTGGCATTGGGTTGCTGAAGGGGATCTTCCAATTGTTGCTTCACATGGGGCGGAGATTGAAGTATATAAATCACTTGATCCAGGGGTCCGTGTTGTCATCTTAAAAGCATTATGTGACATTCGTGTTGAGCAAGAAGATATTCGAAGTTATATTGATGACTCAATTAAACATGGTGTTCAACTTTCAACATTCTGTAAAGAGCGTATTGGAGGTGATTCACGTGGAATTTCTTATTGGTATGAAGGTGACCCCATTATTGGTCATAGGTTGTATCGAGAAATAAGGAAAACTGAAGTGATTCAAATGAAGAAAGGGAAAGCAAGAGGTTCCCAGGTTCTTTCTAGTACATCATACCAGTGGGAAGCCGTTGCTACCAATCTTGATGAATTTCAAGATGTTTCTGAGAAGCTTTTCTCAAGTAAAAACAGAACAGAGGTATCTGTGGGGAAAAGGCTGAAGATAGACATGCTTCCTGAAATTGAGAAAGTTCATAAGAAGAAGGAGAGGTTGCTGAAAAAGCAACAAAGAGAAGCTCTTCTTCTTGATAATTACTTGGTTGTGGATGGGCTTGGTCCTGGGCGTTCTCTTCGCGACAGGAAACCTGTTACCTACACTTTTGATGATTTTGATCGATCAATCAATGAGGCAATTAAAGTAACCAAGCAGAAACAGCCATCTCCAGAACGTATGCCCAGGAGAGAATCAGTAGCAAAACCTGAAGCTTTGACTGATGGTGAATATGGTCCTCCGCAGGCCACACAAGATCTGAATTTTGGTATATCATCTCCTGAATCACCTGAATCTGATGATGATAAGGAAGATCATGAAACTGACACTTTGGATCGAAGCAATCGTCGAAGACAGAAACCTAAGCGGTACTCAGAAAGAGACTTTGTTGAAGAACTATCAGATAATGAGGCAGACTCTGACAGCGATGAAGAAATTGTTGGAGAAGCTGTATATGATGAAGAGTATCTCAAGAAACGCAAGCAGAAAAGAAAGTCTTCTAGTAGTTCTGAAGGAGATGAAGAATATCAGTGGGATGACTACAatgaagaagatgaagaagaggaggaggatgatgatgatgatgatTCCTTGAGCATCAGTGAGGATAGTGACAAACCCCGCAAGGTCAAACAGTTGCATGGCCGAACTAGGAGAGAAACCAAACTCAGGTCTGTGGGTGAGATTCAATCAGGTCTAAGACGCAGCAAGAGGTCTACTAAAAATCGTATAAATTACCGGCAATATGAGGCGTCAGAATCAGAAACAGAGTTTATTAAATCTGAGAAGTCTAATACATCAGTTGATCACTCAGATTCGAGTGAGAATGGTCAATACATGATGGAAAGTGAAGATTCAGATGGCAGTGATGATGAAGAACAAGAAATGAAAGTAGATGAGCCTGTTACTTATCCTGCAGTAGAAGAGAATGAACAAAACCAACCTCCTGAAAAATCAAGTAGTCCTGGTCAGGAGGAAGTTGAGAACACAGGAAAGAGACGCTTCCTTGATTTGAATGAGCTTGCCCCTAGCACTGGTTTTGATGATGGTCCAAACTCAATAATGAAAGATGAAGACAATGATTACTGA 2124 0.4176 MSNGSSPSRPAQRSSPEPEPEPNPPNHDSDSKEETAAAPPVVTRSTRPSRACTMRAASRLHSSPAKKEVSPPPPPSQCSKIVTALVEPPSPSRLPRWGLRAMWEFASVLNFLHLFRPLLNISLEFSAEEFETALLTPNDTLFHIHMPLLKAIPPITRMALTRDTWITVLCRKLRDWWHWVAEGDLPIVASHGAEIEVYKSLDPGVRVVILKALCDIRVEQEDIRSYIDDSIKHGVQLSTFCKERIGGDSRGISYWYEGDPIIGHRLYREIRKTEVIQMKKGKARGSQVLSSTSYQWEAVATNLDEFQDVSEKLFSSKNRTEVSVGKRLKIDMLPEIEKVHKKKERLLKKQQREALLLDNYLVVDGLGPGRSLRDRKPVTYTFDDFDRSINEAIKVTKQKQPSPERMPRRESVAKPEALTDGEYGPPQATQDLNFGISSPESPESDDDKEDHETDTLDRSNRRRQKPKRYSERDFVEELSDNEADSDSDEEIVGEAVYDEEYLKKRKQKRKSSSSSEGDEEYQWDDYNEEDEEEEEDDDDDDSLSISEDSDKPRKVKQLHGRTRRETKLRSVGEIQSGLRRSKRSTKNRINYRQYEASESETEFIKSEKSNTSVDHSDSSENGQYMMESEDSDGSDDEEQEMKVDEPVTYPAVEENEQNQPPEKSSSPGQEEVENTGKRRFLDLNELAPSTGFDDGPNSIMKDEDNDY 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01903 707 MobiDBLite consensus disorder prediction 652 671 - -
Cca11g01903 707 MobiDBLite consensus disorder prediction 518 545 - -
Cca11g01903 707 MobiDBLite consensus disorder prediction 395 707 - -
Cca11g01903 707 MobiDBLite consensus disorder prediction 1 78 - -
Cca11g01903 707 MobiDBLite consensus disorder prediction 593 614 - -
Cca11g01903 707 Coils Coil 333 353 - -
Cca11g01903 707 MobiDBLite consensus disorder prediction 451 476 - -
Cca11g01903 707 MobiDBLite consensus disorder prediction 477 495 - -
Cca11g01903 707 PANTHER REMODELING AND SPACING FACTOR 1 22 706 IPR028938 GO:0006355|GO:0031213
Cca11g01903 707 MobiDBLite consensus disorder prediction 496 517 - -
Cca11g01903 707 PANTHER DDT DOMAIN-CONTAINING PROTEIN DDR4 22 706 - -
Cca11g01903 707 MobiDBLite consensus disorder prediction 401 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01903 Cca-Chr11 44276378 44286425 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Cca11g01903 WHIM1 0.00017 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01903 - - ccaj:109811677 1241.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01903 11 44276378 44286425 Cca11g01903 11 44276378 44286425 ECH
Cca11g01903 11 44276378 44286425 Cca03g00532 03 8894900 8904020 PCT