Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01899 ATGGAAGCTCCCCTCATCAATGACTCCACATTCTCTTCGGCTAACCCTTCCCTGTCCGAGATTTGGCCTCACTCTCAACCTGATGCCACTTCCCTAGCCGGTAACAAGTCACCTGCTAAGCCAAAGCAAGACTATATACACGTGCGAGCTAGAAGGGGCCAAGCCACCGATAGCCACAGCCTCGCCGAGAGAGCTAGAAGAGAAAAAATCAGTGAGAGGATGAAAATTCTTCAAGATTTAGTCCCTGGCTGCAACAAGGTAATTGGTAAAGCACTTGTCCTCGATGAGATAATTAATTATATCCAGTCACTGCAGCGTCAGATTGAGTTCCTTTCAATGAAGCTTGAGGCAGTTAATTCGAGATTGAACTTGAGCCCTGCTATTGAATGTTTTCCTTCAAAAGAAGTTGGCACTCAGCCATTTGACCTTGCAGGAATAATATTTGGATCACAACCGGCCAGGGGATATGATCAAGGATCACAACCTGCATGGTTGCATATGCAGATAGATGGTGGTTTTGAGAAAGCAACATAA 534 0.4551 MEAPLINDSTFSSANPSLSEIWPHSQPDATSLAGNKSPAKPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQIEFLSMKLEAVNSRLNLSPAIECFPSKEVGTQPFDLAGIIFGSQPARGYDQGSQPAWLHMQIDGGFEKAT 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01899 177 PANTHER BNAC05G07950D PROTEIN 37 177 - -
Cca11g01899 177 Gene3D - 51 126 IPR036638 GO:0046983
Cca11g01899 177 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 37 177 IPR024097 GO:0006355
Cca11g01899 177 MobiDBLite consensus disorder prediction 1 41 - -
Cca11g01899 177 Coils Coil 94 121 - -
Cca11g01899 177 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 122 IPR036638 GO:0046983
Cca11g01899 177 CDD bHLH_AtBPE_like 44 126 - -
Cca11g01899 177 MobiDBLite consensus disorder prediction 1 37 - -
Cca11g01899 177 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 54 104 IPR011598 GO:0046983
Cca11g01899 177 SMART finulus 60 110 IPR011598 GO:0046983
Cca11g01899 177 Pfam Helix-loop-helix DNA-binding domain 58 105 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01899 Cca-Chr11 44234742 44238079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01899 36 177 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 66.197 6.26e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca11g01899 HLH 1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01899 - - gmx:100799646 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00528 03 8831756 8835844 Cca11g01899 11 44234742 44238079 ECH
Cca11g01899 11 44234742 44238079 Cca11g01899 11 44234742 44238079 ECH