Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01894 ATGTCTCGCGCATGCGCTGCCGCAGACTCCGCCGCCTCCGGCGAGATCATGCTGTTCGGCGTCAGGCTCGTCGTCGATTCCATGAGGAAGAGCGCCAGCATGAACAACTTCTCACAGTACGAACATCCTCAAGACGCcaactacaacaacaacagcaacaaGGACGCTCTCGCCGCCGGTTACGCCTCCGCCGACGACGCCGTTCCTCAAAACTCCGGCCGGCATCGCGAGCGCGAGCGGAAGCGAGGTGTTCCGTGGACGGAGGAAGAGCACAAGCTGTTTCTGGGGGGATTGCAGAAGGGAGGGAAAGGTGATTGGAGGGGAATCTCCAAAAACTATGTCAAAACACGAACTCCGACGCAGGTTGCAAGCCACGCGCAGAAGTACTTTCTCCGCCGAAGCAACCTCAATCGCCGTCGCCGTAGATCCAGCCTCTTCGACATCACCACCGACTCGGTTTCTGCAAACCCCATGGAGGAAGAACAGGTCCAGAATCAAGACGCGCTGTGTCATGCAGTGCCTGAAACTAATGGATTTCAATTTCCAATGATGCAAGAATATCAGTTAGGGCTAAACTCTGGAGTCCAAGGTGGGAATCGAATGGAAGAACTGACTCTGGGACATGGAAACGTGGAACAGAATGTTGCAGATCCTAAGGGTTGCACAGTGTCTCCCAGTTCTAGTTCAGTGGTTGAGCCACCGACACTGTCCCTTGGGCTCTCCTTCTCATCTGACCAGAGGCAGACATCGTCAAGACATTCAGCTTTACATGCCATACCGTGTTTCAACAATGGAGATAGCATCATTAGTGTTGCCTGA 819 0.5275 MSRACAAADSAASGEIMLFGVRLVVDSMRKSASMNNFSQYEHPQDANYNNNSNKDALAAGYASADDAVPQNSGRHRERERKRGVPWTEEEHKLFLGGLQKGGKGDWRGISKNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDSVSANPMEEEQVQNQDALCHAVPETNGFQFPMMQEYQLGLNSGVQGGNRMEELTLGHGNVEQNVADPKGCTVSPSSSSVVEPPTLSLGLSFSSDQRQTSSRHSALHAIPCFNNGDSIISVA 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01894 272 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 13 272 - -
Cca11g01894 272 MobiDBLite consensus disorder prediction 70 85 - -
Cca11g01894 272 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 81 132 IPR006447 GO:0003677
Cca11g01894 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 134 IPR017930 -
Cca11g01894 272 PANTHER KIN2 13 272 - -
Cca11g01894 272 ProSiteProfiles Myb-like domain profile. 78 130 IPR001005 -
Cca11g01894 272 Gene3D - 84 136 - -
Cca11g01894 272 SMART sant 82 132 IPR001005 -
Cca11g01894 272 MobiDBLite consensus disorder prediction 65 85 - -
Cca11g01894 272 Pfam Myb-like DNA-binding domain 85 130 IPR001005 -
Cca11g01894 272 SUPERFAMILY Homeodomain-like 80 135 IPR009057 -
Cca11g01894 272 CDD SANT 85 130 IPR001005 -
Cca11g01894 272 ProSiteProfiles SANT domain profile. 81 134 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01894 Cca-Chr11 44190631 44192665 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca11g01894 Myb_DNA-binding 6.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01894 - - ccaj:109811676 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01894 11 44190631 44192665 Cca03g00524 03 8730593 8733816 PCT