Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01887 ATGGAAACCCTCTTTGGATTTTCACGTAACAATCAAACTCAAGAAAAAAATAGGTGTCTCTCAACTTCAGTTAAGTCCAACTCCAACTCACCAACTCAATTATTCATTCAGGACCCTCAAAAATCCCAAAACATAGCAATTGTGCTAACATCTTTTGCAGTTTCTGGCAACGGAATTCTGGATGCGCTCCATGATGGTCAAGGACTCGGTGCTGAAACACTTGAAAGTCTCACTAAAATAGCTCCTACCCAAAATGAAGAAGCCAAAATCATCCAAATCAGTGGCAATCCAGATAAACTGGCCGATGCTGTCATTCCTCTACCACATCCTGAGAGCAGTTCCAACAGCCTTCATTCATTTAAAAGCATTGCTTTTCAAATCGAGTTATGA 390 0.4051 METLFGFSRNNQTQEKNRCLSTSVKSNSNSPTQLFIQDPQKSQNIAIVLTSFAVSGNGILDALHDGQGLGAETLESLTKIAPTQNEEAKIIQISGNPDKLADAVIPLPHPESSSNSLHSFKSIAFQIEL 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01887 129 SUPERFAMILY Formin homology 2 domain (FH2 domain) 2 103 - -
Cca11g01887 129 PANTHER FORMIN-LIKE PROTEIN 1 103 - -
Cca11g01887 129 Pfam Formin Homology 2 Domain 2 103 IPR015425 -
Cca11g01887 129 PANTHER FORMIN-RELATED 1 103 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cca11g01887 129 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1 129 IPR015425 -
Cca11g01887 129 Gene3D Formin, FH2 domain 1 106 IPR042201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01887 Cca-Chr11 44085942 44087962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01887 1 103 FH2 protein (formin) Gene Family AT1G24150 39.806 1.61e-18 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01887 - - gmx:100791689 144.05