Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01886 ATGGCCATCGCCGGCTCTCCTTCCGCTGCGCCTCAGCTTCACGTTCTCGCCGTCGACGATAGTCTCGTCGATCGCAAGGTCATTGAACGCTTGCTCAAGATTTCTTCATGCAAAGTGACGGTTGTGGAGAGTGGAACGCGTGCTCTTCAGTATTTGGGGCTTGATGGAGAGAATGATGCTCTTGGTTTTGATAGTGTTAAGGTTAATCTCATAATGACGGATTATTCCATGCCGGGGATGACAGGGTATGAATTACTCAAGAAAATCAAGCAGGAGTCTTCTGTGTTTAGAGAGATTCCGGTAGTGATCATGTCGTCGGAGAATGTTTTGACTCGAATTGATAGATGCCTGGAGGAAGGAGCAGAGGATTTTCTATTGAAGCCAGTCAAATTGGCAGATGTAAGACGCTTAAAAGATTTCATCGTGAAAGGGAAAGTGAAGGAAGGGGAGAAAAGATCTCACAAAAGAATCCGATCAATTGATTGCAGTTCACCTCTATCTGCAACATGCTCACCAATGTCTCTTCCATGTGATCCATCAACATCATTACTCTCACCATTATCTGCAAAGAAGGCTAGATTGTGA 585 0.4496 MAIAGSPSAAPQLHVLAVDDSLVDRKVIERLLKISSCKVTVVESGTRALQYLGLDGENDALGFDSVKVNLIMTDYSMPGMTGYELLKKIKQESSVFREIPVVIMSSENVLTRIDRCLEEGAEDFLLKPVKLADVRRLKDFIVKGKVKEGEKRSHKRIRSIDCSSPLSATCSPMSLPCDPSTSLLSPLSAKKARL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01886 194 Pfam Response regulator receiver domain 15 135 IPR001789 GO:0000160
Cca11g01886 194 CDD REC_typeA_ARR 15 137 - -
Cca11g01886 194 SUPERFAMILY CheY-like 12 143 IPR011006 -
Cca11g01886 194 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 194 IPR045279 GO:0009736
Cca11g01886 194 SMART REC_2 13 138 IPR001789 GO:0000160
Cca11g01886 194 Gene3D - 13 169 - -
Cca11g01886 194 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-LIKE PROTEIN 3 194 - -
Cca11g01886 194 ProSiteProfiles Response regulatory domain profile. 14 142 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01886 Cca-Chr11 44080538 44082896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01886 6 156 Response Regulator Gene Family AT3G48100 75.163 2.06e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca11g01886 Response_reg 1.5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01886 K14492 - gmx:100796843 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00518 03 8628843 8631403 Cca11g01886 11 44080538 44082896 ECH
Cca11g01886 11 44080538 44082896 Cca11g01886 11 44080538 44082896 ECH