Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01884 ATGGCCAATCGATGGCTTAGGCCCGAGGTATACCCATTGTTTGCAGCTGTTGGAGTTGCTGTTGGGATATGTGGTTTGCAGTTGATTCGCAATATCTGCATCAACCCTGATGTCAGTGACTTGATTTTTGTTTGCACcgtggatcaacccctTACAGTAGAAGCAGCAGAATATCCCATCTCTTCCCGCCACTACACCTACAACCGCAAGCAAAAATCTCTCGGCCTCTTGTGCACTAATTTCCTCAGCCTCTACAATCGAGACACCGTTCATTTGATTGGCCTTGACGACGCTGCTTCCAGATTAGGAGTCGAGAGGAGGAGGATCTACGACATTGTCAACGTTCTCGAAAGTATTGGGGTCCTGTCAAGGAGGGCGAAAAATCAATACACATGGAAAGGTTTCGCCGCAATTCCTCTCACTCTCAAGGAGCTCAAGGAAGATGGCGTAAAGGAGAATTCCAATTCCTTGCGCGGTTCTGGCAACGACACTGATAAAGTTTCTGATGACGAAGATGATGAAGAAACGCAGTCCAATTCCGCTACTGGAAGCCAAAGCGACAAGTTAAATACTAATTCTACTCTTCCTAGACCTGTGAAGAATGAAAATCGGAGGGAAAAGTCTCTGGCGCTGCTTACCCAGAATTTTGTCAAGCTCTTTGTCTGCTCTAATGTGGAAATGATCTCCCTCGATGAGGCTGCGAAATTGTTGCTTGGGGATGCACACAATACATCAATAATGAGAACAAAAGTTAGACGCCTATATGACATCGCAAATGTGCTATCTTCCATGAACCTTATTGAGAAGACGCATACGACGGATACAAGAAAACCAGCATTCAGGTGGCTAGGTCCTGAAGGAAAGACATGCAATGAGTCACTTCACAAATCAACTCTCAACGAGTCTAGGAAAAGGACATTTGGAAGTGATATAACAAACATCAGTTTTGAGAGAAATAAAGTGGAGTTGTTCATGAATGAGGATTTGAATCGGAATCCTAAGAAGCCAAGAACTGACAATGATATTGGCCTGAGTCAGGCAGATGAAAACAGCTTAAAACAAGTCACAAAACAAACATCGAAGGGCTATCAGTTTGGTCCTTTCGCTCCAGCTTGTGTGCCCAAAGTTGGAGCCTCTGAAAATGATAATGTGAAGCAGGTGCACGACTGGGACAGTCTTGCATCTGCTCACAATCCTCAATATCAAAACGAAGCTTTGAGAGATCTCTTCTCCCATTACATGGAAGCATGGAAATCGTGGTACTCTGAAATTGCTGGGAAGAGGCTGGTACAAATTTTGTGA 1302 0.4378 MANRWLRPEVYPLFAAVGVAVGICGLQLIRNICINPDVSDLIFVCTVDQPLTVEAAEYPISSRHYTYNRKQKSLGLLCTNFLSLYNRDTVHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSRRAKNQYTWKGFAAIPLTLKELKEDGVKENSNSLRGSGNDTDKVSDDEDDEETQSNSATGSQSDKLNTNSTLPRPVKNENRREKSLALLTQNFVKLFVCSNVEMISLDEAAKLLLGDAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGPEGKTCNESLHKSTLNESRKRTFGSDITNISFERNKVELFMNEDLNRNPKKPRTDNDIGLSQADENSLKQVTKQTSKGYQFGPFAPACVPKVGASENDNVKQVHDWDSLASAHNPQYQNEALRDLFSHYMEAWKSWYSEIAGKRLVQIL 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01884 433 MobiDBLite consensus disorder prediction 151 203 - -
Cca11g01884 433 Pfam E2F/DP family winged-helix DNA-binding domain 70 134 IPR003316 GO:0005667|GO:0006355
Cca11g01884 433 Pfam E2F/DP family winged-helix DNA-binding domain 206 284 IPR003316 GO:0005667|GO:0006355
Cca11g01884 433 SUPERFAMILY "Winged helix" DNA-binding domain 206 285 IPR036390 -
Cca11g01884 433 PANTHER TRANSCRIPTION FACTOR E2F 63 424 IPR015633 GO:0000978|GO:0006357
Cca11g01884 433 MobiDBLite consensus disorder prediction 178 198 - -
Cca11g01884 433 Gene3D - 64 136 IPR036388 -
Cca11g01884 433 Gene3D - 198 285 IPR036388 -
Cca11g01884 433 Pfam NADH-ubiquinone reductase complex 1 MLRQ subunit 7 39 IPR010530 -
Cca11g01884 433 SMART E2F_TDP_2 204 284 IPR003316 GO:0005667|GO:0006355
Cca11g01884 433 SMART E2F_TDP_2 69 134 IPR003316 GO:0005667|GO:0006355
Cca11g01884 433 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 63 424 - -
Cca11g01884 433 SUPERFAMILY "Winged helix" DNA-binding domain 68 132 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01884 Cca-Chr11 44057216 44069329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01884 64 424 E2F-DP Transcription Factor Family AT3G48160 55.647 1.58e-131 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Cca11g01884 E2F_TDP 1.2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01884 K09391 - gmx:100795252 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01884 11 44057216 44069329 Cca11g01884 11 44057216 44069329 ECH
Cca11g01884 11 44057216 44069329 Cca03g00515 03 8579293 8583952 PCT