Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01873 ATGGCATCATTTGCAGGCACTACTCAGAAGTGCACAGTATGTGAAAAGAAAGTTTACTGGGTGGAACAGCTCACTGCTGACAACAAGGTCTACCACAACTCTTGCTTCAGGTGTCACCACTGCAAGGGTACCCTCAAGCTGAGTAATTATTGTTCCTTTGAGGGTGTACTATACTGTAAGCCTCATTTTGATCAACTGTTTAAGATGACAGGCAGCTTGGACAAAAGTTTTGAAGGTATTCCAAGAAATCCTAGAGTTGAAAGATCTGCTGATCAGGTCCAAACCAACAAGGTTTCAAGATTGTTTTCTGGAACTCAGGAAAAGTGTGTTGGTTGCAAAAAAACAGTGTACCCAATTGAGAAGGTGGCTGTTGATGGCAAATCTTACCATAAGTGTTGTTTCAGGTGCACCCATGGAGGTTGCGTAATCAGCCCCTCAAATTATATTGCTCATGAACATCGTCTTTATTGTAGACACCACCATACTCAGCTCTTCAAGCAGAAGGGTAATTTCAGTCAGTTAGACAAGCATGAAAATGTCCAAGTCATGACTGAAAACACAACACAACATCCTAGTAATGGCGATACTGGTCCAGAAAATGGCTCTTTGTAA 612 0.4183 MASFAGTTQKCTVCEKKVYWVEQLTADNKVYHNSCFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGIPRNPRVERSADQVQTNKVSRLFSGTQEKCVGCKKTVYPIEKVAVDGKSYHKCCFRCTHGGCVISPSNYIAHEHRLYCRHHHTQLFKQKGNFSQLDKHENVQVMTENTTQHPSNGDTGPENGSL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01873 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Cca11g01873 203 Gene3D Cysteine Rich Protein 5 75 - -
Cca11g01873 203 Gene3D Cysteine Rich Protein 103 173 - -
Cca11g01873 203 SMART lim_4 108 160 IPR001781 -
Cca11g01873 203 SMART lim_4 10 62 IPR001781 -
Cca11g01873 203 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 196 - -
Cca11g01873 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 134 - -
Cca11g01873 203 Pfam LIM domain 11 65 IPR001781 -
Cca11g01873 203 Pfam LIM domain 109 164 IPR001781 -
Cca11g01873 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Cca11g01873 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 173 - -
Cca11g01873 203 CDD LIM2_SF3 109 169 - -
Cca11g01873 203 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Cca11g01873 203 PANTHER OS06G0237300 PROTEIN 1 196 IPR045268 GO:0051015
Cca11g01873 203 ProSiteProfiles LIM domain profile. 107 167 IPR001781 -
Cca11g01873 203 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01873 Cca-Chr11 43908640 43912700 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Cca11g01873 LIM 5.3e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01873 K09377 - gmx:100805084 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01873 11 43908640 43912700 Cca11g01873 11 43908640 43912700 ECH
Cca11g01873 11 43908640 43912700 Cca03g00504 03 8319870 8323566 PCT