Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01868 ATGAAAGTGATACGCAAATTGGTGGAACTGAGTCCATTCATAGCAATGGTGATTGTGGAGTGCCTTGACGTGGGATTGACAACGTTGAGTAAAGCCGCCATGTCCAAAGGAATGAACCACTTTGTCTTTGTTGTCTACTCCAATGCTCTTGCAACTCTCATACTCCTCCCTATCTCTTTCTTCATCCACAGAAGACCACCCCTTTCTTTCTCGCTTCTCTCCAAGTTCTTCCTCCTCGGTATTCTTGGCATAACTGTCATGCAGAATTGTGTTTTCACCGGCATTGACTACAGCTCCCCCACTCTTGGATCCGCTATGAGCAACTTGACTCCAGCAATCACTTTTCTGTTAGCGtattcaattattTTGCTACATAAATTAAAAAACATATATTATAGGATGGAGAAGTTGGATATTGGAAGCTCAATAAGCCAGATCAAAATCATGGGCACAGTGCTGTCCATCTCTGGGGCATTACTCGTGACCCTTTACAAGGGCAGTTCCATCAGCAGCTTTGAAATTAAACCCTCTCCATCACAATCATATTCATTGCCATCTTTGTTGGCTGAAACCAGTAACTGGGTCATTGGGGGTCTTTTTCTTGCCCTTGCCTCTCTGTCTCTTGCAGCCTGGAACATTACTCAGGCAACAATTCTTAAAGGATATTCATCTCAGTTAACCATAGTAGCCTTCTATTGCCTATTTGGAAGCATCCAAAGTGGAATACTTTCTCTCATTCTAGTCAGAGATTCAAATGACTGGAAAATAAGCCCTGACATTCAGCTCATCTCTATATTCTATTCAGCTGTTGTGGGAAGTGTGGTGACGTTTTCTGTAATGACTTGGTGCATAAAAAGGAAAGGACCTGTGTTTGTTAGCATGTTCAAGCCTGTGGGGATTGCCATTGCTGCCTTTTCCAGTGTTCTCTTCATTGGTGAAACACTCCATGTTGGCAGTGTGATTGGCGCAGTGATAATCGCCATTGGATTTTATACAGTATTGTGGGCACAATCAAAAGAGGAAAAGTTGAAAGGCATCGCAGCTGATAGTCAATCATCCCCATCTGACCAAGCGAGTCCTCTACTCAACATTTTAGCATAA 1101 0.4269 MKVIRKLVELSPFIAMVIVECLDVGLTTLSKAAMSKGMNHFVFVVYSNALATLILLPISFFIHRRPPLSFSLLSKFFLLGILGITVMQNCVFTGIDYSSPTLGSAMSNLTPAITFLLAYSIILLHKLKNIYYRMEKLDIGSSISQIKIMGTVLSISGALLVTLYKGSSISSFEIKPSPSQSYSLPSLLAETSNWVIGGLFLALASLSLAAWNITQATILKGYSSQLTIVAFYCLFGSIQSGILSLILVRDSNDWKISPDIQLISIFYSAVVGSVVTFSVMTWCIKRKGPVFVSMFKPVGIAIAAFSSVLFIGETLHVGSVIGAVIIAIGFYTVLWAQSKEEKLKGIAADSQSSPSDQASPLLNILA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01868 366 Pfam EamA-like transporter family 197 334 IPR000620 GO:0016020|GO:0016021
Cca11g01868 366 Pfam EamA-like transporter family 24 121 IPR000620 GO:0016020|GO:0016021
Cca11g01868 366 PANTHER WAT1-RELATED PROTEIN 9 360 IPR030184 GO:0016021|GO:0022857
Cca11g01868 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 254 339 - -
Cca11g01868 366 PANTHER WAT1-RELATED PROTEIN 9 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01868 Cca-Chr11 43835006 43837491 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01868 9 352 Nodulin-like Gene Family AT5G40240 42.614 4.27e-81 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01868 - - ccaj:109809148 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00797 06 20834507 20837336 Cca11g01868 11 43835006 43837491 ECH
Cca11g01868 11 43835006 43837491 Cca11g01868 11 43835006 43837491 ECH