Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01867 ATGGTGGCGGTGGGACGCAGCTTCGAGGAATGGAGTCCATTTGCAGCGATGGTGATCGTGGAGTGCCTCGATGTGGGCCTCAGCACGTTGGGCAAAGCAGCCATGTCCAGAGGAATGAACCACTTCGTCTTCGTCCTCTACTCCAACGCTCTCGCTACGCTCATTCTCCTCCCTTCCTCTTTCATCACCAACTCACGTCCACTTCAACTTTTCAAATACGTCACACTCAGTATTGTATCCCTTATGTTTGCACTTTGCAGAGCAACGAGAGCACCCCTTTCTTTCTCGCTTCTCTCCAAATTCTTCCTCCTCGGCCTTCTTGGCATAACTATCATGCAGAATTGTGTTTTCACCGCCATTGACTATAGCTCTCCCACACTTGGATCCGCTATGAGCAACATAACTCCAGCAGTCACTTTTGTGCTCGCGGTCATCCTCAGGATGGAGAAGTTGGATATTGGAAGCTCAATAAGCCAGATCAAAGTCATGGGCACAGTGCTGTCCATCTCTGGAGCATTACTCGTGACCCTTTACAAGGGCAGTCCCATCGGAGGACTTCGAACTCAACCCTCTCCATCACAGCCATTGCCATCTTTGTTGGCTGAAACCGGTAACTGGGTCATTGGAGGTCTCTTCTTTGCCACTGCCTCTCTATCTCTTGCAGCCTGGAATATTACTCAGGCAGCAATTCTTAAGGGATATTCATCTCAGTTAACCATAGTAGCCTTCTATTGCTTGTTTGGAAGCATCCAAAGTGGAATACTTTCTCTCATTGTAGTCAGAGATCCAAATGACTGGAAAATAAGCCCTGACATTGAGCTCATCTCAATATTCTATTCAGCTATTGTGGGAAGTGTGTTGACATTTTCTGTATTGACTTGGTGCATAAAAAGGAAAGGACCTGTATTTGTTAGCATGTTCAAGCCTGTGGGGATTGCCATTTCAGCCTTTTCTAGTGTTGTCTTCCTTGGTGAAACACTCCATGTTGGCAGTATCATTGGCGCAGTGATAATTGCCATCGGATTTTACACAGTATTGTGGGCACAATCAAAAGAGGAAAACGTGAAAGGCCTCCAAGTTGATAGACAATCATCCCCGTCTGCCCAAAGGATGAAATTGTTGGACTGGGGAGAAGAAGGACAAAGGACAGAAGCAGAAGTTGCCTCGTTGAGGGCAGCGTTTACCCAGGAAGTTGTTGTTTGGCATAAACTTGTTCATCCCAATGTCACAAAGTTTATAGGCGCAACGATGGGGTCTTCTGAGTTGCAGATACAAACTGATAATGGTCTAATTGGCATGCCGAGCAATGTCTGTTGTGTTGTTGTGGAGTATCTTGCTGGAGGCAATCTGAAACAATACCTTATAAAGAACAGGAGGAGGAAGTTAGCTTTTAAGGTTGTCATCCAGCTGGCACTTGATCTTGCAAGAGGGCTAAGTTATCTTCACTCTCAGAAGATTGTCCACAGAGATGTAAAGACAGAGAACATGTTGTTGGATAAGACCCGCACAGTTAAAATTGCTGATTTTGGCGTTGCACGTGTTGAGGCATCAAATCCTAATGATATGACTGGGGAGACTGGTACTCTTGGTTATATGGCTCCAGAGGTTTTAAACGGCAACCCCTATAACAGGAAATGTGATGTGTATAGTTTTGGCATCTGTTTATGGGAAATATATTGTTGTGACATGCCATATCCTGACCTAAGTTTCTCAGAAATTACTTCGGCTGTTGTTCGCCAGAATTTGAGACCAGAAATACCAAGATGTTGCCCTAGTTCTCTAGCAAATGTAATGAAGAAGTGCTGGGATGCCTCCCCTGACAAGCGGCCGGAGATGGATGAGGTAGTTTCCATGCTGGAGGCCATTGACATATCCAAAGGTGGAGGTATGATCCCTCATGATCAGCAGCAGGGTTGCTTTTGCTTCCGCAAGCATAGAGGGCCCTGA 1947 0.4587 MVAVGRSFEEWSPFAAMVIVECLDVGLSTLGKAAMSRGMNHFVFVLYSNALATLILLPSSFITNSRPLQLFKYVTLSIVSLMFALCRATRAPLSFSLLSKFFLLGLLGITIMQNCVFTAIDYSSPTLGSAMSNITPAVTFVLAVILRMEKLDIGSSISQIKVMGTVLSISGALLVTLYKGSPIGGLRTQPSPSQPLPSLLAETGNWVIGGLFFATASLSLAAWNITQAAILKGYSSQLTIVAFYCLFGSIQSGILSLIVVRDPNDWKISPDIELISIFYSAIVGSVLTFSVLTWCIKRKGPVFVSMFKPVGIAISAFSSVVFLGETLHVGSIIGAVIIAIGFYTVLWAQSKEENVKGLQVDRQSSPSAQRMKLLDWGEEGQRTEAEVASLRAAFTQEVVVWHKLVHPNVTKFIGATMGSSELQIQTDNGLIGMPSNVCCVVVEYLAGGNLKQYLIKNRRRKLAFKVVIQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEITSAVVRQNLRPEIPRCCPSSLANVMKKCWDASPDKRPEMDEVVSMLEAIDISKGGGMIPHDQQQGCFCFRKHRGP 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01867 648 SUPERFAMILY Multidrug resistance efflux transporter EmrE 267 351 - -
Cca11g01867 648 PANTHER DUAL-SPECIFICITY KINASE TKL-PL-4 FAMILY-RELATED 371 642 - -
Cca11g01867 648 Gene3D Transferase(Phosphotransferase) domain 1 369 625 - -
Cca11g01867 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Cca11g01867 648 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 371 642 - -
Cca11g01867 648 PRINTS Tyrosine kinase catalytic domain signature 480 498 IPR001245 GO:0004672|GO:0006468
Cca11g01867 648 PRINTS Tyrosine kinase catalytic domain signature 442 455 IPR001245 GO:0004672|GO:0006468
Cca11g01867 648 PRINTS Tyrosine kinase catalytic domain signature 546 568 IPR001245 GO:0004672|GO:0006468
Cca11g01867 648 PRINTS Tyrosine kinase catalytic domain signature 590 612 IPR001245 GO:0004672|GO:0006468
Cca11g01867 648 Pfam Protein tyrosine and serine/threonine kinase 390 619 IPR001245 GO:0004672|GO:0006468
Cca11g01867 648 ProSiteProfiles Protein kinase domain profile. 327 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01867 648 SUPERFAMILY Protein kinase-like (PK-like) 389 619 IPR011009 -
Cca11g01867 648 CDD STKc_MAP3K-like 371 619 - -
Cca11g01867 648 SUPERFAMILY Multidrug resistance efflux transporter EmrE 83 179 - -
Cca11g01867 648 Pfam EamA-like transporter family 208 346 IPR000620 GO:0016020|GO:0016021
Cca11g01867 648 SMART serkin_6 331 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01867 Cca-Chr11 43814889 43825089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01867 371 648 MAP Kinase Kinase Kinase AT3G22750 73.050 1.01e-160 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Cca11g01867 PK_Tyr_Ser-Thr 7e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01867 - - ccaj:109809148 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01867 11 43814889 43825089 Cca11g01867 11 43814889 43825089 ECH