Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01864 ATGCGCGGAATTGAACTTGAGGCCAAGCAAAATGGTGGCTTGAAGTACTCATATCCTCAATCTCCCTTCTCACCACTCCAAACTCCTAACGATGGTAACATTAGTAGCAACGATGAAGAAACAACAACGGCATCATCTCTCAGCAGAATCAGTCCACTCATTCTGTTGGTAATAATAGTTCTAGCAGTGATCTTCTTCGTGTACGGACTCGTCCACTTGGTTCTATGGTTCCTCATGAAAAGGCCATCACCTCCATCACTTTACAACTCCAACAGGTTCCACGAATCCACACGCACACGTGTTCTCCAACGCCAGCTTCAGCAGCTCTTCCGCCTGCACGATTCAGGTCTAGACCAAGCCCTCATTGATTCTCTACCCCTTTTCCATTACCAAGACTTGTTGGGGTCAAAGGAACCCTTCGATTGTGCAGTGTGTCTCTGCGAGTTTTCTGAACACGACAAGCTGAGATTGCTTCCTATGTGCACCCACGCGTTTCACATGAACTGTCTTGACACGTGGCTTCTCTCCAATTCCACGTGTCCTCTTTGCAGGGCCTCGCTCTCCAACTACATGGAGAATCATCAGAATCCGGTGTTTAACGTTGACACTGACAATTCTTTGGTTCTGCCAAATGGGGTGGAAGAGAACGCGCGTTTAGAAAGCCAAAGATGGGTGAGTTCTGAGGCACGAGTTAGTGGGAAAAGGGTGTTTTCAGTGAGGCTGGGGAAGTTCAGAAACAGTGGTTTGGAGGGTGGAGAGGTAGGGGGTGGTGGTTGTAGTTTGAATGAGAGGAGATGCTACTCCATGGGTTCGTATCGTTATGTGGTTCGTGATTCGAATCTGCAAGTGGTGTTATCTGGATCTCATGATGAGAGAGATGGTGATGTTTCGGAAAATGGGAAGATGATAGGAGACTCAACGATAGGTGAGAGCTTTTCTGTTTCCAAGATATGGCTTTGGTCCAAGAAGAAAAGCTTTCATGCTTCAAATGTACCTTTCCCATGA 1005 0.4706 MRGIELEAKQNGGLKYSYPQSPFSPLQTPNDGNISSNDEETTTASSLSRISPLILLVIIVLAVIFFVYGLVHLVLWFLMKRPSPPSLYNSNRFHESTRTRVLQRQLQQLFRLHDSGLDQALIDSLPLFHYQDLLGSKEPFDCAVCLCEFSEHDKLRLLPMCTHAFHMNCLDTWLLSNSTCPLCRASLSNYMENHQNPVFNVDTDNSLVLPNGVEENARLESQRWVSSEARVSGKRVFSVRLGKFRNSGLEGGEVGGGGCSLNERRCYSMGSYRYVVRDSNLQVVLSGSHDERDGDVSENGKMIGDSTIGESFSVSKIWLWSKKKSFHASNVPFP 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01864 334 SUPERFAMILY RING/U-box 121 198 - -
Cca11g01864 334 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 10 334 - -
Cca11g01864 334 SMART ring_2 142 183 IPR001841 -
Cca11g01864 334 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 334 - -
Cca11g01864 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 194 IPR013083 -
Cca11g01864 334 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Cca11g01864 334 CDD RING-H2_PA-TM-RING 141 184 - -
Cca11g01864 334 Pfam Ring finger domain 141 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01864 Cca-Chr11 43797962 43799098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01864 48 324 C3H Transcription Factor Family AT2G18650 40.062 6.17e-53 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01864 - - ccaj:109807149 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01864 11 43797962 43799098 Cca11g01864 11 43797962 43799098 ECH