Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01860 ATGGTGGTCAGATCGTCCTCGAATTTGTCTGACCTGGTGACTGAGGACAGTTCAAATTCCCCTCATACTCCTGGAGCTCTTCCCCATCCCCTGATTGTTCCAGGAATCAAGTCTGATGTGGATGGCAAACCAAGGGACAATGATGATTTAAATGCTTGCTCATCAGAATTCCCTCAAAAGATCATTATAGTGGCAAATTTTCTTCCTCTTCATGCTCAAAAGGATGAAATATCTGGCAAATGGTGCTTCACTTATGATGAAGATTCAATCTTGTTTCCATTAAAGAATGGTCTCTCTTCTGACTTTGAGGTTCTTTATGTGGGATCTCTCAAGGTTGATGTTGAAACTGGTGAACAAGAGAAAGTTTCTCTTCAGCTGCTGGAGGAATTCAATTGCTTGCCTACCTTTCTTCCTTCAGAAATTCATGAACAATTTTATAGTGGATTCTGCAAGCAATATTTGTGGCCTCTGTTCCATTACATGTTGCCCTTGTATCCAGACTATAGCAATCGCTTTGACAGGTCACTGTGGCAGGCTTATGTTTCTGCAAACAAAATATTTGCTGATAAAGTCATGGAGGTTATTAATCCAGAACATGATTATGTGTGGGTTCATGATTATCATCTTATGGTTCTTGCAACATTTCTAAGGAAGAGGTACAGTTGGATCAAGCTAGGATTCTTCCTCCACAGTTCATTTCCTTCATCGGAAATTTATCGGACTTCACCTGTGAGGGATGAAATTTTGAAAGCACTGCTTAATGCAGATTTGATTGGTTTTCATACATTTGATTATGCTCGCCACTTTCTTTCTTGCTGCAGTCGAATTCTTGGCTTAAAATATGAATGCAAAAGGGGTTACATCAAGCTTGAATACTTTGGCCGTACAATATTCATTAAAATCTTGCCTATAGGGATTCATATGGGTAGACTTCAATCTGCATTGAGTCACCCTTCTTTTTCTGCTAATGTCAGAGAATTGTTGAAGTTCAAGGGGAAAAAACTTATTCTCGGAGTTGATGATATGGACATTTTTAAAGGTATCAGCCTAAAGCTCTTGGCCGTTGAACAACTCCTTCAGCAATATCCTGAACTGCAGGGTGAACTAATACTGGTCCAGATTGTAAATCCAGCAAGGAGTACCGGGAAGGATGTAGAGACAGCAAGGAATGAGATGCACATTACTGCCAATAGGATAAATGAAAGATTTGGCTTGCCAGATTATGAGCCTGTCATCATCATTAATCGTCATATTCCTATATATGAGAAGGCAGCCTACTATGCTTTAGCAGAATGCTGCATTGTGAATGCAGTGCGAGATGGTATGAATTTGGTTCCCTATGAGTACATTGTCTGTAGGCAGGGAAGTGCTAAAATGGATGAAGCTTTAGAAATTGGTTCTGAGTCCCCTCGGACAAGTGCACTTGTTGTTTCTGAGTTTATAGGTTGCTCTCCTTCTCTTAGTGGGGCAATCAGGGTAAACCCATGGGACATTAATGCTGTAGCTGATGCACTGAATTTGGCCATCACAATGTCCAGTGGAGAGAAACAGTTGCGCCATGATAAACACTATCGTTATGTTAGCTCTCATGACGTGGTTTACTGGGCTAAAAGTTTTGTGCAAGATCTTGAGAACTCGTGCAAGGATCACTACAGTAAAAATTGCTGGGGGATTGGCTTTGGCCTTAATTTCAGAGTTTTATCCCTTTCTCCTAGTTTCAGGAAGCTTAACAAAAGCCATACTATTTCTGCATATGAAAGGACAAATTGCAGGGCAATTTTTTTGGATTATGATGGTACCATTGTACCTCAAACTTCCATCACTAAAATTCCATGTCCTGAAATCATAGATGTTCTGAATAAGCTTTGCAGTGACCCTAAGAACACTGTGTTTATAGTAAGTGGCAGGGAGAAAACCACGCTGAGTGAATGGTTTGATCAGTGTGAGAATCTGGGTATAGCAGCTGAGCATGGTTATTTTCTAAAatggagtccacagtcaacttgggaaaagaatcatataagtaccaatttttctgggaaagaaattgttgaacctgtgatgagaatgtatactgaggcaacagatggctcttatatagagaccaaagagagtgccttggtatggcactactataatgctgatcctgattttggatcttggcaagccaaggagctattggatcatcttgaaaatttgtttgcaaatgaaccctttgttgtaaagaagggaaagcatattattgaagtcaagtcagaggggattactaaagggctaattgtagaggacatcctgtcccagatgaccaagaaagggaaatccccagattttgtactgtgcataggggatgatagatctgacgaggatatgtttgagagcttactaaccaaagcttacggtggaacctcttctcctgcaccagaaatcttttcatgcactgttggtcagaaaccaagtaaagctaagtactacttagatgatactgaggatgtgatggggttgcttcaagCTCTTGGTGCCATTTCGGGCCCAAATCATCATTTCCTGAAGAATACTCTTCTGGAAAAACAGAAGAAGGCCTGCTTCAAGGGAGTAGTTTACAATGATTTTCGAGCTTTGATTAAACAGGAAACTGCGGCATTGAGATTCTCAGGAACCAGCACCAGGGGTTCGACTGTTAAAAGAGTTTTTGCTTTAGATTGTTAG 2706 0.3267 MVVRSSSNLSDLVTEDSSNSPHTPGALPHPLIVPGIKSDVDGKPRDNDDLNACSSEFPQKIIIVANFLPLHAQKDEISGKWCFTYDEDSILFPLKNGLSSDFEVLYVGSLKVDVETGEQEKVSLQLLEEFNCLPTFLPSEIHEQFYSGFCKQYLWPLFHYMLPLYPDYSNRFDRSLWQAYVSANKIFADKVMEVINPEHDYVWVHDYHLMVLATFLRKRYSWIKLGFFLHSSFPSSEIYRTSPVRDEILKALLNADLIGFHTFDYARHFLSCCSRILGLKYECKRGYIKLEYFGRTIFIKILPIGIHMGRLQSALSHPSFSANVRELLKFKGKKLILGVDDMDIFKGISLKLLAVEQLLQQYPELQGELILVQIVNPARSTGKDVETARNEMHITANRINERFGLPDYEPVIIINRHIPIYEKAAYYALAECCIVNAVRDGMNLVPYEYIVCRQGSAKMDEALEIGSESPRTSALVVSEFIGCSPSLSGAIRVNPWDINAVADALNLAITMSSGEKQLRHDKHYRYVSSHDVVYWAKSFVQDLENSCKDHYSKNCWGIGFGLNFRVLSLSPSFRKLNKSHTISAYERTNCRAIFLDYDGTIVPQTSITKIPCPEIIDVLNKLCSDPKNTVFIVSGREKTTLSEWFDQCENLGIAAEHGYFLKWSPQSTWEKNHISTNFSGKEIVEPVMRMYTEATDGSYIETKESALVWHYYNADPDFGSWQAKELLDHLENLFANEPFVVKKGKHIIEVKSEGITKGLIVEDILSQMTKKGKSPDFVLCIGDDRSDEDMFESLLTKAYGGTSSPAPEIFSCTVGQKPSKAKYYLDDTEDVMGLLQALGAISGPNHHFLKNTLLEKQKKACFKGVVYNDFRALIKQETAALRFSGTSTRGSTVKRVFALDC 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01860 901 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 548 - -
Cca11g01860 901 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 1 846 - -
Cca11g01860 901 Gene3D Glycogen Phosphorylase B; 313 528 - -
Cca11g01860 901 MobiDBLite consensus disorder prediction 1 24 - -
Cca11g01860 901 Pfam Trehalose-phosphatase 594 828 IPR003337 GO:0003824|GO:0005992
Cca11g01860 901 Gene3D Glycogen Phosphorylase B; 52 312 - -
Cca11g01860 901 CDD GT20_TPS 60 544 IPR001830 GO:0003824|GO:0005992
Cca11g01860 901 Gene3D - 721 849 IPR023214 -
Cca11g01860 901 Gene3D - 590 702 IPR023214 -
Cca11g01860 901 SUPERFAMILY HAD-like 591 839 IPR036412 -
Cca11g01860 901 MobiDBLite consensus disorder prediction 1 31 - -
Cca11g01860 901 Pfam Glycosyltransferase family 20 60 545 IPR001830 GO:0003824|GO:0005992
Cca11g01860 901 TIGRFAM T6PP: trehalose-phosphatase 591 838 IPR003337 GO:0003824|GO:0005992
Cca11g01860 901 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 846 IPR001830 GO:0003824|GO:0005992
Cca11g01860 901 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 793 IPR006379 -
Cca11g01860 901 CDD HAD_TPP 592 832 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01860 Cca-Chr11 43772290 43775589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01860 1 842 Trehalose Biosynthesis Gene Families AT1G23870 65.006 0.0 1176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01860 K16055 - gmx:100808800 1472.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00491 03 8030370 8036775 Cca11g01860 11 43772290 43775589 ECH
Cca11g01860 11 43772290 43775589 Cca11g01860 11 43772290 43775589 ECH
Cca11g01860 11 43772290 43775589 Cca03g00491 03 8030370 8036775 PCT