Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01856 ATGACTGAAAGGGATCGGCGCACGCTATCATTCCCGGCGGTTCACCCATGCGAAGCCGTATCTCCGCCCACACTCCTCGCCTCTCTAATCACCCTCTCCCAATCCATATGCAACTACCAACCCCACCTCTTCCCCACCCAGCGACGAAACGCCAGAGAAACCATACGCCAAATCAACATCGTTTCGATATTCCTTCAAGAAATTCAAGAGCGCGCCCTGTCAATCCCCCACTCCACCATCCTCAGCCTCAGCCTCTCCGAGCTCCACTTCACCTTACAGAAGATCCACTTCCTCATGCAAGACCTCACTCTCCAAGGCGCTCGCCTCCTACTCCTCGCCAAATCGCAACACGTCGCGTCCCTCTTCCGCGCCTTCGTCCGCGCCATGGCCACTTCCCTCGACGTCTTGCCCCTTCACAACCTCCACGTGTGCCGCGAAGTCAAAGAGCTCGCGGAACTCGTGACAAGGCAAGCCAGAAAAGCCGGGTTCGAAGTGGACCCCAGCGACGCACGTGCCACCAAAACCCTCCACACGGTTATAAGCCAATTCGCCAGAGGAACCGAACCGGACCTCACTTCCATGCACCAAATAATCAATTACCTCCAAATCAAAACCTGGACAGATTGTAACACCGAGATTAAATTCCTCGAGGATGAAATTAACCTAGAGTGCCGCGACCGCGAGGAGCGAGAGGTTCCACTTCTAAGTAGCTTAGTAGGCTTTTTAACTTACTGCAGAGGACTAATATTCGAAACCAATAACCCCCAAGGTAGATGCAGCACGGAGTTAGCAATAACGTCGTTAACGCTATTAACGTCCCTCAACCCCGAGGATTTCCGTTGCCCGATTTCCCTCGAGCTCATGACGGATCCGGTAACGGTGTCAACCGGTCAAACCTACGACCGACCCTCCATTACGAAATGGCTCAGAGCAGGGAACACCACGTGCCCCAAAACAGGGGAGAAGCTAACAACCACAGAGTTAGTTCCCAACACAACGCTCAAGAGGCTCATCCAACAATTCTGCGCCGACAACGGCATTTACCTCGCCAACAACTCTAACCGTAACCGCAACATCGTCGCCGGTAGTCCCGCGGCCGCGCACGCCGTGCAGTTTCTCGCGTGGACCCTCACGCAGCGGCTCGCGTTCGGGACGGAGGAGCAGAAGCACAAGGCCGCGCACGAGATTCGCGTGCTCGCCCGAAACAGCATTTTCAATAGGGCGTGTTTGGTTGAAGTGGGAGCAGTGTCTCCTCTGTTGGAGCTTCTAGCCTCTGCGAAGGATAAATCCACGCAAGAGAACGCAATCTCTGCTCTATTGAAGCTCTCTAAAGACTCGAATGGGCCGAAAAGTATTATAACCAGCGGGGGCATAAGCGTAATTGTGTCAGTGCTGAAAAATGGAGTTAGTTTAGAAGCTCGACAAGTCGCGGCTGCGGTTATATTTTATCTCTCGTCGGTTAAAGAGTATCGGAAGTTAATAGGGGAAAACCCTGAGGTGATTCCAGCGTTGGTGGAGTTAGTTAAGGAAGGAACAACCTGCGGGAGGAAAAACGCTGTCGTTGCGATATTCGGGTTACTTTTACTTCCTAGGAATCACCAAAGAGCGCTTTCCGCGGGTGCCGTTCCCGCGCTGCTTGATATTTTGGCTTCTTCGGATAAGGAGGAGCTTGTGGCGGAATCTTTGGCGGTTCTTGCGGCGCTGGCCGAGAATGTTGACGGGGCACGTGCGATTTTGCAGGGGTCGGCGTTGGCGTTGATTACGGGGATGCTGCGAACTGCGACGTCACGTGCGGGGAAAGAGCACTGTGTTTCGATCTTGTTGTCGCTGAGCGTGAATGTCGGCGCGGAGGTGGTGGCGGTTCTGGCGAAGGACCCTTCGCTGATGCCTTTGCTTTATTCGCTTCTGACGGAGGGGACTTCTCACGCCGCAAAGAAAGCGCGGTTCCTCATCAGAGTGATACAAGATTTCCACGAGACTAGAACTTTGGGGCTCAAGGGTTCCTCCGTTCCGCAAGAACCATCGCTTCACGTTTGGTGA 2040 0.5392 MTERDRRTLSFPAVHPCEAVSPPTLLASLITLSQSICNYQPHLFPTQRRNARETIRQINIVSIFLQEIQERALSIPHSTILSLSLSELHFTLQKIHFLMQDLTLQGARLLLLAKSQHVASLFRAFVRAMATSLDVLPLHNLHVCREVKELAELVTRQARKAGFEVDPSDARATKTLHTVISQFARGTEPDLTSMHQIINYLQIKTWTDCNTEIKFLEDEINLECRDREEREVPLLSSLVGFLTYCRGLIFETNNPQGRCSTELAITSLTLLTSLNPEDFRCPISLELMTDPVTVSTGQTYDRPSITKWLRAGNTTCPKTGEKLTTTELVPNTTLKRLIQQFCADNGIYLANNSNRNRNIVAGSPAAAHAVQFLAWTLTQRLAFGTEEQKHKAAHEIRVLARNSIFNRACLVEVGAVSPLLELLASAKDKSTQENAISALLKLSKDSNGPKSIITSGGISVIVSVLKNGVSLEARQVAAAVIFYLSSVKEYRKLIGENPEVIPALVELVKEGTTCGRKNAVVAIFGLLLLPRNHQRALSAGAVPALLDILASSDKEELVAESLAVLAALAENVDGARAILQGSALALITGMLRTATSRAGKEHCVSILLSLSVNVGAEVVAVLAKDPSLMPLLYSLLTEGTSHAAKKARFLIRVIQDFHETRTLGLKGSSVPQEPSLHVW 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01856 679 PANTHER U BOX DOMAIN-CONTAINING 4 664 - -
Cca11g01856 679 SUPERFAMILY ARM repeat 376 654 IPR016024 -
Cca11g01856 679 Gene3D - 349 531 IPR011989 -
Cca11g01856 679 Pfam Armadillo/beta-catenin-like repeat 406 443 IPR000225 GO:0005515
Cca11g01856 679 SMART arm_5 445 486 IPR000225 GO:0005515
Cca11g01856 679 SMART arm_5 529 570 IPR000225 GO:0005515
Cca11g01856 679 SMART arm_5 402 444 IPR000225 GO:0005515
Cca11g01856 679 Pfam U-box domain 276 345 IPR003613 GO:0004842|GO:0016567
Cca11g01856 679 ProSiteProfiles U-box domain profile. 274 348 IPR003613 GO:0004842|GO:0016567
Cca11g01856 679 CDD RING-Ubox_PUB 279 321 IPR045210 -
Cca11g01856 679 PANTHER OS07G0532750 PROTEIN 4 664 - -
Cca11g01856 679 Gene3D - 532 655 IPR011989 -
Cca11g01856 679 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 540 583 IPR000225 GO:0005515
Cca11g01856 679 SMART Ubox_2 278 341 IPR003613 GO:0004842|GO:0016567
Cca11g01856 679 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 348 IPR013083 -
Cca11g01856 679 SUPERFAMILY RING/U-box 276 349 - -
Cca11g01856 679 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 414 457 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01856 Cca-Chr11 43684310 43686785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01856 2 679 U-box Gene Family AT1G60190 40.466 2.39e-166 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01856 - - gmx:100787869 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00486 03 7914096 7916913 Cca11g01856 11 43684310 43686785 ECH
Cca11g01856 11 43684310 43686785 Cca11g01856 11 43684310 43686785 ECH