Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01854 atgaagGAAACCAGTGATGGGTTCGTGAGAGCGGATCAGATTGATCTGAAGAGCATAGACGAACAGTTGCAGAGGCACCTCAACAAGGTGTTGACCATAGATAAGAAAAAGCGCTCCGAAGAGGATGAAGATGCTGATCAAGTTCATGTTCACACCACCAGCGCCACTGCTTCTCCAACTGCATCTAAGAGACACACTGCTGTCGTTAACTTCAAGAAGCGAAAGCAGGACTGGGAGATTGACCCTTCTAAACTCATCATCAAGAGTCCTATTGCTCGTGGCACTTTTGGCACAGTCCATCGTGGTGTCTATGATACCCAAGATGTTGCTGTGAAATTGTTGGACTGGGGAGAAGAAGGACAAAGGACAGAAGCAGAAGTTGCCTCGTTGAGGGCAGCGTTTACCCAGGAAGTTGTTGTTTGGCATAAACTTGTTCATCCCAATGTCACAAAGTTTATAGGCGCAACGATGGGGTCTTCTGAGTTGCAGATACAAACTGATAATGGTCTAATTGGCATGCCGAGCAATGTCTGTTGTGTTGTTGTGGAGTATCTTGCTGGAGGCAATCTGAAACAATACCTTATAAAGAACAGGAGGAGGAAGTTAGCTTTTAAGGTTGTCATCCAGCTGGCACTTGATCTTGCAAGAGGGCTAAGTTATCTTCACTCTCAGAAGATTGTCCACAGAGATGTAAAGACAGAGAACATGTTGTTGGATAAGACCCGCACAGTTAAAATTGCTGATTTTGGCGTTGCACGTGTTGAGGCATCAAATCCTAATGATATGACTGGGGAGACTGGTACTCTTGGTTATATGGCTCCAGAGGTTTTAAACGGCAACCCCTATAACAGGAAATGTGATGTGTATAGTTTTGGCATCTGTTTATGGGAAATATATTGTTGTGACATGCCATATCCTGACCTAAGTTTCTCAGAAATTACTTCGGCTGTTGTTCGCCAGAATTTGAGACCAGAAATACCAAGATGTTGCCCTAGTTCTCTAGCAAATGTAATGAAGAAGTGCTGGGATGCCTCCCCTGACAAGCGGCCGGAGATGGATGAGGTAGTTTCCATGCTGGAGGCCATTGACATATCCAAAGGTGGAGGTATGATCCCTCATGATCAGCAGCAGGGTTGCTTTTGCTTCCGCAAGCATAGAGGGCCCTGA 1167 0.4524 MKETSDGFVRADQIDLKSIDEQLQRHLNKVLTIDKKKRSEEDEDADQVHVHTTSATASPTASKRHTAVVNFKKRKQDWEIDPSKLIIKSPIARGTFGTVHRGVYDTQDVAVKLLDWGEEGQRTEAEVASLRAAFTQEVVVWHKLVHPNVTKFIGATMGSSELQIQTDNGLIGMPSNVCCVVVEYLAGGNLKQYLIKNRRRKLAFKVVIQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEITSAVVRQNLRPEIPRCCPSSLANVMKKCWDASPDKRPEMDEVVSMLEAIDISKGGGMIPHDQQQGCFCFRKHRGP 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01854 388 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 382 - -
Cca11g01854 388 SMART serkin_6 85 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01854 388 Gene3D Transferase(Phosphotransferase) domain 1 186 377 - -
Cca11g01854 388 CDD STKc_MAP3K-like 91 359 - -
Cca11g01854 388 Pfam Protein tyrosine and serine/threonine kinase 87 359 IPR001245 GO:0004672|GO:0006468
Cca11g01854 388 Gene3D Phosphorylase Kinase; domain 1 72 168 - -
Cca11g01854 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Cca11g01854 388 ProSiteProfiles Protein kinase domain profile. 85 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01854 388 MobiDBLite consensus disorder prediction 37 62 - -
Cca11g01854 388 PANTHER DUAL-SPECIFICITY KINASE TKL-PL-4 FAMILY-RELATED 1 382 - -
Cca11g01854 388 SUPERFAMILY Protein kinase-like (PK-like) 65 359 IPR011009 -
Cca11g01854 388 PRINTS Tyrosine kinase catalytic domain signature 182 195 IPR001245 GO:0004672|GO:0006468
Cca11g01854 388 PRINTS Tyrosine kinase catalytic domain signature 220 238 IPR001245 GO:0004672|GO:0006468
Cca11g01854 388 PRINTS Tyrosine kinase catalytic domain signature 286 308 IPR001245 GO:0004672|GO:0006468
Cca11g01854 388 PRINTS Tyrosine kinase catalytic domain signature 330 352 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01854 Cca-Chr11 43668209 43673774 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01854 1 320 MAP Kinase Kinase Kinase AT5G50000 77.812 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Cca11g01854 PK_Tyr_Ser-Thr 8.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01854 - - gmx:100807921 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00484 03 7863196 7868420 Cca11g01854 11 43668209 43673774 ECH
Cca11g01854 11 43668209 43673774 Cca11g01854 11 43668209 43673774 ECH