Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01853 ATGAAAAACGCCACTACTAGTGATTCATCAAAACTTGATCGCAAAACTATTGAAAAGAACCGAAGAATCCACATGAAAGCTCTATGCTTCAAGCTTGTTTCTACTATTCCTTCTAAGTATCTCAAACCCACCAAGGACATGCTTTCGCAGCAGGATCAGCTGGATCTAGCGGCCACGTATATAAAGCATCTGAGAGAAAGAATAGAGAAATTGAAGGGGGAGAAGGAGCAAGCGATGAACATGATGAGATCAAACCAAAACAATAATAAAATTTTCAATATTGGGTTAGAGTTGCCTTTACTCAATATACAGTACTTCGATTCGGGCATTGAAGTGATGTTGATTAGTGGGTTGAACAAGAACTTCATGCTCTATGAAGTAATTAGTGTCCTTGAGGAAGAAGGCGCTGAAGTTGTCAGTGCTAACTTCTCTACCGTCGCTGATAAGATCGTTTACACCCTTCATGCTCAGGTTAAAATATCAAGAGTTGGTGTTGAGCCTACAAGAGTACATCAAAGGCTTCGGGAGTTGATTGCGCCACTAGAAAGCTGGGAATACATATCATGA 567 0.4039 MKNATTSDSSKLDRKTIEKNRRIHMKALCFKLVSTIPSKYLKPTKDMLSQQDQLDLAATYIKHLRERIEKLKGEKEQAMNMMRSNQNNNKIFNIGLELPLLNIQYFDSGIEVMLISGLNKNFMLYEVISVLEEEGAEVVSANFSTVADKIVYTLHAQVKISRVGVEPTRVHQRLRELIAPLESWEYIS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01853 188 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 9 64 IPR011598 GO:0046983
Cca11g01853 188 Gene3D - 2 92 IPR036638 GO:0046983
Cca11g01853 188 PANTHER TRANSCRIPTION FACTOR BHLH162 7 178 - -
Cca11g01853 188 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 7 178 IPR015660 GO:0003700|GO:0006357
Cca11g01853 188 Coils Coil 61 88 - -
Cca11g01853 188 Pfam Helix-loop-helix DNA-binding domain 14 65 IPR011598 GO:0046983
Cca11g01853 188 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 79 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01853 Cca-Chr11 43640945 43642221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01853 3 178 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 32.796 3.41e-23 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca11g01853 HLH 3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01853 - - gmx:100811485 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00483 03 7800832 7803236 Cca11g01853 11 43640945 43642221 ECH
Cca11g01853 11 43640945 43642221 Cca11g01853 11 43640945 43642221 ECH
Cca11g01853 11 43640945 43642221 Cca03g00483 03 7800832 7803236 PCT