Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01851 ATGGCCATCAGAGGCGTGGATTTCAAGTGGTATGATGGCTTTTTTTTGTCCATGCTCGCCACCAGTGTAGTCATTGTTGCAATTAATTGGAATCGCTATCATTCTTGCACATATCCGTTGCACATATGGATTGTGGTCGACTACACTACCGTGTTTGTTTTCCGGCTCTTGATGTTTGTTGATAATGGGCTAGCTGCGGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGATATGCTCGTTTCTGTGGACGAGTGGTTGTCCTTTCAATCCTTGTGTTGCTTCTCTATCCATTTCTTTGGACTTGGACTGTAATTGGTACCCTGTGTTTCAGCAGTGCCAAGAATTGTTTGCCTGAACAGGGTCAAAAATGGGGCTTTCTCATCTGGTTACTTTTTAGTTATTGTGGACTCCTTTGCATTGCTTGTATGTCTCTGGGGAAGTGGTTGACACGAAGACAAGCACATTTATTGCGTGCCCAACAGGGTATCCCTGTTTCCGAGTATGGGGTTCTGGTTGACATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGGGGCATGGGCCAAGATGCTGCTGCATATCATCCAGGACTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTTCCAAAGTTCAGGTTAAAGGCTGTTCCTACTGATTGCAGTGAATGCCCCATCTGCTTAGAAGAGTTCTATGTAGGGAATGAGGTCCGTGGCCTACCTTGTGCGCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTAGGCTGAATGTGAAATGTCCTCGTTGCCGTTGCTCAGTATTCCCAAACCTTGATCTTAGTGCACTGTCCAATCTCCGTGCTGAGCCTGAACGATCTTCTGCCAGTGTTGTGACAACAACCAGATATGTGAGAGGTCAACCATCTAGTCAAAGTTACCGGTTAAGATTGCAGGGTCTTCTGCGCCCAGTCCGAGCTGAAATTGCAGAGCCAGTGGGTGACACAACTAATATGTTGGAAAATGCTGAGAACGGTGTTGTATCAATTGTGACTCAAAATGCATCATCTGAAGACCATGTCTTTTCTGTCGAATCCATGCCTGCCGCTCTCAGTCTTTCTTCTGCACAAAGCTAG 1149 0.4595 MAIRGVDFKWYDGFFLSMLATSVVIVAINWNRYHSCTYPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRVVVLSILVLLLYPFLWTWTVIGTLCFSSAKNCLPEQGQKWGFLIWLLFSYCGLLCIACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMGQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFYVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRAEPERSSASVVTTTRYVRGQPSSQSYRLRLQGLLRPVRAEIAEPVGDTTNMLENAENGVVSIVTQNASSEDHVFSVESMPAALSLSSAQS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01851 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 362 IPR044793 GO:0004842|GO:0010182
Cca11g01851 382 SUPERFAMILY RING/U-box 217 284 - -
Cca11g01851 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Cca11g01851 382 Pfam Ring finger domain 234 276 IPR001841 -
Cca11g01851 382 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Cca11g01851 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 362 - -
Cca11g01851 382 CDD RING-H2_RNF111_like 234 278 - -
Cca11g01851 382 SMART ring_2 235 275 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01851 Cca-Chr11 43613709 43620064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01851 58 360 C3H Transcription Factor Family AT3G47990 73.203 2.71e-158 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01851 K16284 - gmx:100812016 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01851 11 43613709 43620064 Cca11g01851 11 43613709 43620064 ECH
Cca11g01851 11 43613709 43620064 Cca03g00480 03 7722132 7728247 PCT