Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01849 ATGAAGAACTTATATTGGTTTAAAGAAATTTCTAACAACGTTAGATCAGGGAGAAGGCTTTCACTTGGGGAATACAAGCGAGCAGTGTCATGGTCTAAGTATCTGGTCTCATCTGGGGCAGCCATAAAGGAAGGAGAAGAAGAATGGAGTGCTGATATGTCTCTGTTGTTCATTGGATCCAAATTTGCTTCTGGCAGGCACAGTAGGATTTACAGAGGCATATACAAGCACATGGATGTTGCAATTAAGCTGGTAAGTCAACCGGAGGAGGATGAAGAATTGGCTGTTTTGCTAGAGAAGCAATTCACTTCTGAGGTTGCTTTGCTCTTTCGATTGCGCCATCCAAATATCATAACTTTTGTTGCAGCTTGCAAAAAACCTCCTGTTTTTTGTATAATCACTGAATATCTGGCTGGGGGTTCCTTGAGAAAATATTTGCATCAGCAAGGACCACATTCAGTTCCTCACAAACTTGTTCTGAAATTGGCATTAGACATTGCACGTGGCATGCAGTATCTTCATTCTCAGGGTATACTTCATAGGGATCTCAAATCAGAAAATCTGCTGTTGGGGGAAGATTTGTGCGTAAAAGTAGCAGATTTTGGAATCTCATGCTTGGAATCTCAGACAGGCAGTGCAAAAGGATTCACAGGAACATACCGTTGGATGGCACCTGAAATGATAAGAGAAAAGCGTCACACCAAGAAAGTAGATGTTTATAGTTTCGCCATAGTTCTATGGGAACTCCTAACAGGATTGACGCCATTTGATAACATGACAGCAGAGCAGGCAGCATATGCTGTGACTCACAAGAACGCACGGCCTCCGTTGCCATGTAACTGTCCAAGGGCATTTAGTCATCTAATCAACAGATGCTGGTCAAGCAATCCAGATAAACGACCACATTTTGATGAGATAGTCTCAATTTTGGAGAGCTATACTGAAGCACTTGAGCAGGATCCAGAATTTTTCTCTACTTACAAACCACGTCCTAATAATATAATTCTTAGATGCTTACCAAAATGTAATACTGCCAATAAATCTGCTTCTTGCAAAGCTTAG 1062 0.4134 MKNLYWFKEISNNVRSGRRLSLGEYKRAVSWSKYLVSSGAAIKEGEEEWSADMSLLFIGSKFASGRHSRIYRGIYKHMDVAIKLVSQPEEDEELAVLLEKQFTSEVALLFRLRHPNIITFVAACKKPPVFCIITEYLAGGSLRKYLHQQGPHSVPHKLVLKLALDIARGMQYLHSQGILHRDLKSENLLLGEDLCVKVADFGISCLESQTGSAKGFTGTYRWMAPEMIREKRHTKKVDVYSFAIVLWELLTGLTPFDNMTAEQAAYAVTHKNARPPLPCNCPRAFSHLINRCWSSNPDKRPHFDEIVSILESYTEALEQDPEFFSTYKPRPNNIILRCLPKCNTANKSASCKA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01849 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Cca11g01849 353 CDD STKc_MAP3K-like 63 310 - -
Cca11g01849 353 PANTHER SERINE/THREONINE-KINASE HT1-LIKE PROTEIN 1 332 - -
Cca11g01849 353 ProSiteProfiles Protein kinase domain profile. 56 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01849 353 Pfam Protein tyrosine and serine/threonine kinase 58 310 IPR001245 GO:0004672|GO:0006468
Cca11g01849 353 PRINTS Tyrosine kinase catalytic domain signature 134 147 IPR001245 GO:0004672|GO:0006468
Cca11g01849 353 PRINTS Tyrosine kinase catalytic domain signature 172 190 IPR001245 GO:0004672|GO:0006468
Cca11g01849 353 PRINTS Tyrosine kinase catalytic domain signature 218 228 IPR001245 GO:0004672|GO:0006468
Cca11g01849 353 PRINTS Tyrosine kinase catalytic domain signature 237 259 IPR001245 GO:0004672|GO:0006468
Cca11g01849 353 PRINTS Tyrosine kinase catalytic domain signature 281 303 IPR001245 GO:0004672|GO:0006468
Cca11g01849 353 Gene3D Transferase(Phosphotransferase) domain 1 139 334 - -
Cca11g01849 353 SMART serkin_6 56 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01849 353 PANTHER SERINE-THREONINE PROTEIN KINASE 1 332 - -
Cca11g01849 353 SUPERFAMILY Protein kinase-like (PK-like) 44 310 IPR011009 -
Cca11g01849 353 Gene3D Phosphorylase Kinase; domain 1 45 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01849 Cca-Chr11 43583916 43587184 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01849 30 319 MAP Kinase Kinase Kinase AT1G62400 62.585 5.18e-133 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Cca11g01849 PK_Tyr_Ser-Thr 1.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01849 - - gmx:100778530 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01849 11 43583916 43587184 Cca11g01849 11 43583916 43587184 ECH
Cca11g01849 11 43583916 43587184 Cca03g00477 03 7669642 7674488 PCT