Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01846 ATGGAAGGTTATGGGCATGGATCCAAGAAGGGGTTCTGGACTGCGCAGGAAGACAAAGTTCTAGGTGATTATGTAAAGAAGCATGGAACGGGGAAGTGGAATCGGATTCCTAAAGTGACAGGGTTAAAGAGAAGCGGCAAAAGTTGCAGACTGAGGTGGATGAATTATTTGAGTCCTAAAGTTAAGCGTGGAGATTTCTCAGAGGAAGAAGAAGACCTTATTATTCGCCTCCACAACCTCCTTGGAAATAGGTGGTCTTTGATCGCGGGGAGGATTCCGGGGAGGACAGACAACCAAGTGAAGAACTTTTGGAACACTCATTTAAGCAAGAAGCTTGGTGTTAAGAAGAAGAAAAAGAGTAAAGTGGGTGTTCCTCCAAAATCTATCCCTATAGTTGAACCAAAGGGTACGGATCAATATTCATCAGAATTCGTTGGTGAAGGTGAAAAGCTTGTCCATGAAACTGAAAGCTTGTGTGGTGATCTAATCGACTTCGCGAGCATCATGCATGAGGGGATTATGAATGAGAGTGCCTTTTCTTTTGTTAATAGTAATGTGTTTGATCTATGCACTCCTTATTTCACCGAGGAGTGGTTTTTAGGCCTTTGA 609 0.4302 MEGYGHGSKKGFWTAQEDKVLGDYVKKHGTGKWNRIPKVTGLKRSGKSCRLRWMNYLSPKVKRGDFSEEEEDLIIRLHNLLGNRWSLIAGRIPGRTDNQVKNFWNTHLSKKLGVKKKKKSKVGVPPKSIPIVEPKGTDQYSSEFVGEGEKLVHETESLCGDLIDFASIMHEGIMNESAFSFVNSNVFDLCTPYFTEEWFLGL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01846 202 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Cca11g01846 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 57 IPR017930 -
Cca11g01846 202 CDD SANT 13 57 IPR001005 -
Cca11g01846 202 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Cca11g01846 202 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 6 123 - -
Cca11g01846 202 Pfam Myb-like DNA-binding domain 11 57 IPR001005 -
Cca11g01846 202 Pfam Myb-like DNA-binding domain 63 108 IPR001005 -
Cca11g01846 202 Gene3D - 64 127 - -
Cca11g01846 202 SMART sant 62 110 IPR001005 -
Cca11g01846 202 SMART sant 9 59 IPR001005 -
Cca11g01846 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Cca11g01846 202 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 6 123 - -
Cca11g01846 202 CDD SANT 66 107 IPR001005 -
Cca11g01846 202 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cca11g01846 202 Gene3D - 10 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01846 Cca-Chr11 43533906 43535670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01846 2 139 MYB Transcription Factor Family AT5G40330 64.336 2.05e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca11g01846 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01846 K09422 - zju:107418407 195.282