Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01840 ATGGGTTTTTCCTCCCTCCACGTCTGCATGGACTCATCAGATCACTGCCTGCAGGGCACAATTCACGAGGAGTATGGTGGGATGGATTCTTCTTCACCATCTGGCGACATGCTTCCATGTTCGAGGCCAATGACAGAGAAGAGGCTAAGACCCCCCCAAGAGCAAGCCCTCAAGTGTCCCAGGTGTGAATCAACACACACCAAATTCTGCTACTACAACAACTACAGCCTCTCCCAGCCTAGGTACTTCTGCAAAACTTGTAGAAGGTACTGGACCAAAGGAGGTACTCTTAGGAACATTCCTGTTGGTGGTGGCTGCAGAAAGAACAAGAAAGTTTCCACTAAGAAACACAATGAACCTCAACCACCTATTACTCAAAATCAACCTCACCCTGCACCCTCTTATCTTCATAACCACAACGATCTTCAACATTCCTTCCTAGATGTGCAATTTTCCCACCTCAATAACTTACTTGGGACTAATGCTGGGGCACTGGTAAACCCTAATTTCATGCTCGAGAATCCTAGGCCTATTGACTTCGTGGAAAGCAGGTTGGATGATATGAATATGATTAGGAGTTCCACTAGGAATTTTGATCTTCTTGAAAATAgtgatgtgagtgtgggtggtggtgttggggtgggtgatgtgagtgGATACAGTGGATTGCCATTGAGTTATCAAGCTCTTTCTTCGTCTCCAGCATTTGGGGGCATGTCCCTTGATGGAAGCATTAGAAATGTTGGAACTTATATAATGGACTCTTGCCAGCGATTTATGTTGCCCTGTGATGGAGGTGATAATTCCCTTAATGGTTCTATTGATGTGAAGCCAAACCCTAAGCTGTTGTCCCTTGAATGGGATCAGGGTTGCTCTGATGCTGAAAAAGTGTCATTGGGATATCTTAATGGTTCAGGATCATGGATCGGCTATGGATCTTCCGCAACAAACCCTTTGGTCTAG 963 0.4289 MGFSSLHVCMDSSDHCLQGTIHEEYGGMDSSSPSGDMLPCSRPMTEKRLRPPQEQALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSTKKHNEPQPPITQNQPHPAPSYLHNHNDLQHSFLDVQFSHLNNLLGTNAGALVNPNFMLENPRPIDFVESRLDDMNMIRSSTRNFDLLENSDVSVGGGVGVGDVSGYSGLPLSYQALSSSPAFGGMSLDGSIRNVGTYIMDSCQRFMLPCDGGDNSLNGSIDVKPNPKLLSLEWDQGCSDAEKVSLGYLNGSGSWIGYGSSATNPLV 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01840 320 MobiDBLite consensus disorder prediction 106 133 - -
Cca11g01840 320 PANTHER DOF ZINC FINGER PROTEIN DOF5.6-LIKE 20 310 - -
Cca11g01840 320 Pfam Dof domain, zinc finger 55 111 IPR003851 GO:0003677|GO:0006355
Cca11g01840 320 ProSitePatterns Zinc finger Dof-type signature. 59 95 IPR003851 GO:0003677|GO:0006355
Cca11g01840 320 ProSiteProfiles Zinc finger Dof-type profile. 57 111 IPR003851 GO:0003677|GO:0006355
Cca11g01840 320 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 310 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01840 Cca-Chr11 43425101 43426903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01840 1 289 C2C2-Dof Transcription Factor Family AT5G62940 40.361 8.05e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca11g01840 zf-Dof 2.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01840 - - gmx:100815061 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01840 11 43425101 43426903 Cca03g00469 03 7393772 7394915 PCT