Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01835 ATGTTTACAGAATGGAAGAAGATAAGGGTTCTTGGAGAGGGTTCCTATGGAACTGTCTCTCTTGCTTCGACCATTCTTCCAGAAGGAGTGCAAGGAGTGCTGATAGCTGTTAAGAGTTCGAAGCCTCACGGGGTAAAGTCGTTGCAGAAAGAAGAAGCCATATTGGAGTTATTCTATGGTTGCAAAGAAATCGTTCAATGCATTTGGGGTCTACCCACCATGGAGAATGGTCGTTACATCTACAATCTCTTGATGGAGTATGCTCCATTAGGTTCTCTTGGAAACTTGATCAAAAAGAGAAAATCACTCCTGGAAAGTGAAGTTCAAGTCTACACACGCATGCTTCTCAAAGGGCTTTCTATCATTCATCAATACGGAGTTGTTCATTGTGATCTTAAGCCGGACAACGTGCTTTTATTTCCTAACCATGAACATGGTGGGTATCAACTCAAGATTAGTGATTTTGGATTGTCTAAGACCAAAGACGAGGTGTTTGATGCTGACTCTTGGAAGATTAAGTTTAGAGGTACACCATATTACATGTCCCCAGAATCGGTCATGGGCCAAATTGAAGCTCCCTTGGATATATGGTCTCTTGGCTGCATGGTTATTGAGATGCTCACGGGGTTACCTGCATGGCACCATGTTCCCACCACACGTGACTTAATGTTTAAACTTGCTTTTCTTAAAGAAGCACCACCACTACCTTCGAATTTGAGTCCCCTTTGTGGAGATTTCTTGAATAAATGCTTTGTGAAGGACCCTAATCAGAGGTGGACTGCCAACATGCTTCTGAACCATCCATTTGTTTCCATTACAGGCAAAGTTTTACCGGAAAATGAAAAATTCATTGAACCCAAACTCGTCAACAAAGGACATGCTGATTTGAAATTGGAAAATAGTTCTCCTCAAACTACACGTGACATGTCAAGTTCATTCTTAGATACACTATCAAGTTTATTACCACTTGACCTTCTCTCAATATTATAA 990 0.4111 MFTEWKKIRVLGEGSYGTVSLASTILPEGVQGVLIAVKSSKPHGVKSLQKEEAILELFYGCKEIVQCIWGLPTMENGRYIYNLLMEYAPLGSLGNLIKKRKSLLESEVQVYTRMLLKGLSIIHQYGVVHCDLKPDNVLLFPNHEHGGYQLKISDFGLSKTKDEVFDADSWKIKFRGTPYYMSPESVMGQIEAPLDIWSLGCMVIEMLTGLPAWHHVPTTRDLMFKLAFLKEAPPLPSNLSPLCGDFLNKCFVKDPNQRWTANMLLNHPFVSITGKVLPENEKFIEPKLVNKGHADLKLENSSPQTTRDMSSSFLDTLSSLLPLDLLSIL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01835 329 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 4 280 - -
Cca11g01835 329 Pfam Protein kinase domain 6 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01835 329 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Cca11g01835 329 ProSitePatterns Protein kinases ATP-binding region signature. 11 38 IPR017441 GO:0005524
Cca11g01835 329 SMART serkin_6 5 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01835 329 SUPERFAMILY Protein kinase-like (PK-like) 3 292 IPR011009 -
Cca11g01835 329 ProSiteProfiles Protein kinase domain profile. 5 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01835 329 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 280 - -
Cca11g01835 329 CDD STKc_MAPKKK 4 270 - -
Cca11g01835 329 Gene3D Transferase(Phosphotransferase) domain 1 1 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01835 Cca-Chr11 43387133 43388738 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01835 4 281 MAP Kinase Kinase Kinase AT4G36950 42.268 2.93e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca11g01835 Pkinase 3.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01835 - - ccaj:109802690 485.337