Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01834 ATGGAAGAAACATTTGTTCCCTTACGCGGGATCAAGAACGACCTCAAAGGAAGACTTGTGTGCTACAAACAAGATTGGACTAGTGGATTCCAGGCAGGCATCAGGATCCTTGCCCCAACTACATATATATTTTTTGCTTCAGCAATTCCAGTTATCTCTTTTGGAGAGCAACTAGAGAGAAACACAGATGGAGCTCTAACTGCAGTGCAGACCCTTGCATCAACCGCACTATGTGGCATTGTCCATTCAATCTTTGGCGGGCAGCCCCTCCTCATACTAGGTGTAGCCGAGCCAACTGTTCTGATGTACACATTCCTTTATGACTTCGCAAAGGATAGAAAGGATTTGGGTCACAAACTATTCCTTCCTTGGACTGGATGGGTGTGTGTTTGGACTGCCTTGTTGCTCTTCTTGCTGGCAATTCTTGGTGCATGCTCCATAATCAACAGATTCACACGCCTAGCAGGTGAACTATTTGGTCTGCTAATTGCAATGCTCTTTATGCAGCAGGCAATAAGGGGACTTGTGGAAGAGTTCGGTGCAGCCCAGTCCAAGAGAGAAGTTACCAATCAGATTGCACTCCAATCCTCTTGGCTGTTTGGAAATGGAATGTTTGCTTTGGTTTTGTCATTCGGCCTTCTGTTTACTGCACTAAGAAGCCGTAAGGCTAGATCCTGGAGATATGGAACAGGATGGTTGCGGGGATTTGTAGCTGATTATGGAGTCCCACTAATGGTTCTTGTGTGGACTGCTGTGTCTTATATACCTACCAATAAGGTTCCAAGGGGAATCCCAAGGCGACTTTTCAGTCCAAATCCATGGTCTCCTGGTGCATACTCAAATTGGACTGTAATTAAGGAAATGTTGAATGTGCCTCCCATGTATATTATTGGAGCATTTATACCAGCAACCATGATTGCTGTGCTTTACTACTTTGATCACAGTGTTGCATCACAACTTGCCCAGCAGAAGGAGTTCAATCTAAGAAAACCCTCATCTTATCATTATGACCTTCTCCTCTTGGGCTTCCTGACCATTTTGTGTGGGCTTATTGGAATACCTCCATCCAACGGTGTGATTCCCCAATCTCCAATGCATACTAAAAGCTTAGCTACTCTAAAACATCAGCTCTTGCGGAATAAGCTTGTATCGGCTGCACGAAAAAGCATACAGAAAAATATGAACCTTTGTCAATTATACCGAAGTATGCAAGAAGCATATGATCAAATGCAGACTCCATTAGCTCACCAAATACCACCAGCCATGGGGCTAAAGGAGTTGAAGGAATCCACCGTTCAACTGGCTTCAAGTCATGGATACATTGATGCCCCTATTGATGAGGTTGTTTTTGATGTGGATAAGGATATTGATGATCTTTTGCCGGTTGAAGTTAAAGAACAGCGTCTCAGCAATCTGCTGCAGGCATTGATGGTCGGGGCTTGTGTTGCTGCTATGCCTCTTTTGAAGAAGATACCGACTTCAGTGCTTTGGGGTTACTTTGCTTTCATGGCAATTGAAAGCTTGCCCGGAAATCAGTTTTGGGAGAGAATCTTGTATCTTTTCACTGCTCCGAGTCGAAGATACAAGTATATCTATACTCATATCCAATTTTATCTTTTCCACCTAGGATTCATAGATTTAAATAGTGTCAAAGATTTCTTCCAGCATCAACTTCCTACTTTTAGTGCATAA 1692 0.4338 MEETFVPLRGIKNDLKGRLVCYKQDWTSGFQAGIRILAPTTYIFFASAIPVISFGEQLERNTDGALTAVQTLASTALCGIVHSIFGGQPLLILGVAEPTVLMYTFLYDFAKDRKDLGHKLFLPWTGWVCVWTALLLFLLAILGACSIINRFTRLAGELFGLLIAMLFMQQAIRGLVEEFGAAQSKREVTNQIALQSSWLFGNGMFALVLSFGLLFTALRSRKARSWRYGTGWLRGFVADYGVPLMVLVWTAVSYIPTNKVPRGIPRRLFSPNPWSPGAYSNWTVIKEMLNVPPMYIIGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVSAARKSIQKNMNLCQLYRSMQEAYDQMQTPLAHQIPPAMGLKELKESTVQLASSHGYIDAPIDEVVFDVDKDIDDLLPVEVKEQRLSNLLQALMVGACVAAMPLLKKIPTSVLWGYFAFMAIESLPGNQFWERILYLFTAPSRRYKYIYTHIQFYLFHLGFIDLNSVKDFFQHQLPTFSA 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01834 563 PANTHER BORON TRANSPORTER 2-RELATED 1 533 - -
Cca11g01834 563 PANTHER ANION EXCHANGE PROTEIN 1 533 IPR003020 GO:0005452|GO:0006820|GO:0016020
Cca11g01834 563 Gene3D Helical hairpin bin 18 60 - -
Cca11g01834 563 Pfam HCO3- transporter family 462 532 IPR011531 GO:0006820|GO:0016021
Cca11g01834 563 Pfam HCO3- transporter family 8 186 IPR011531 GO:0006820|GO:0016021
Cca11g01834 563 Pfam HCO3- transporter family 204 375 IPR011531 GO:0006820|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01834 Cca-Chr11 43358851 43364716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01834 1 531 Antiporters AT3G62270 80.038 0.0 870
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01834 K24194 - gmx:100782542 1016.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01834 11 43358851 43364716 Cca11g01834 11 43358851 43364716 ECH
Cca11g01834 11 43358851 43364716 Cca03g00465 03 7298750 7305542 PCT