Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01832 ATGTTGCCCTCATCAGTTTCTCTCATGGACGACCTCACACAGCCAGTGCATGTGCCACAAAACTACTTGAAACCCAGCATGGAAGATCAACTTCCTTTTGGAGCTCCTTCCTCGCAGGGTTTCTTGCAAGATTTTCATCAGTTTCATGTGAATGGCTCCTCATCATCTAATCCCGTTTTCGGGGTACAAACTCATCCAAATTTTGATCCATTTGATCATAATGTTACATGTGAGTATGCGCCTCCTGATTTTGATGTTTATGAGAGCAAGCCTTTTGCTGAAAGTGATGGTAGAGGGCATGCTCATCTTATGGACAATTTCCAACATGTAGGTTATAGTTTGAATCTCCCTCGGACAAATCAATTGGATGTCATGGTCGCAAACCAAACTTATCTGCCCTTCAATGCTCTAGAAACCAAGCCTTTGAATTTTGTTGTACCAGATGAAGTCTCATGCATATCGCCACCAAATTATTACAAGAGAATTGGCTTCAATAAGAATATCAGGGAATCTCCTAGAACTAGGAGAACATTCAAAGCTCGGAAGAAGTCCAACATAGTGAAGGGGCAATGGACACCAGATGAAGACAGATTATTGATTCAACTGGTCGAACAATTTGGAGTGAGGAAGTGGTCACATATAGCTCAGGCTTTGCCTGGAAGAATAGGGAAACAATGCAGGGAACGATGGCATAACCATTTAAGGCCAGACATTAAGAAGGACATATGGACTGAAGAAGAGGATAAGATACTGATCGAAGCTCATGCAGAGATAGGAAATAAGTGGGCAGAGATTGCAAAAAGGTTGCCTGGAAGAACTGAGAACTCAATCAAAAACCATTGGAACGCGACCAAGAGAAGGCAATATTCCAAAAGAAAGTGTCGTTCAAAGTACCCAAGAGGCACTCTTCTTCAGGAATACATCAAGAGCTTGAACTTGGACCAAAATCCACCAATAGACTATCGAAAAAAATCTGCTAAAAATACTAAAGCCAAGACAAACAATAATGGCAAAGCAGCAGCAGCTCAGTCTCAGTCTCAGTGTCCAGATCAATTTTGTCCCAATGGCCAGTTAGTGGCAAAGTATGATTTTAACGAGGTCCCAGATTTTTGTTTGGATGATAATTTGTTTGAAGAGGGGTGTAGCATTAATTCTCTGCTAGATGATATGCATAGTGCTTCTACAATGGATGAGAAAGATCTTGATGAAAAAATGCAATGTGCTCCTACTATGGAGGGAAAACAATCTCATCAGAGAGGAATCATGCAGTTCGCTCATGTTGTTAATGTTGACGAGCATCATGAAGTTAAGACAGAACTGGATTTGGTGGAGATGATGTCCCACGAATACATCAAGAGCTTGAACTTGGACCAAAATCCACCAATAGACTATCGAAAAAAATCTGCTAAAAATACTAAAGCCAAGACAAACAATAATGGCAAAGCAGCAGCAGCTCAGTCTCAGTCTCAGTGTCCAGATCAATTTTGTCCCAATGGCCAGTTAGTGGCAAAGTATGATTTTAACGAGGTCCCAGATTTTTGTTTGGATGATAATTTGTTTGAAGAGGGGTGTAGCATTAATTCTCTGCTAGATGATATGCATAGTGCTTCTACAATGGATGAGAAAGATCTTGATGAAAAAATGCAATGTGCTCCTACTATGGAGGGAAAACAATCTCATCAGAGAGGAATCATGCAGTTCGCTCATGTTGTTAATGTTGACGAGCATCATGAAGTTAAGACAGAACTGGATTTGGTGGAGATGATGTCCCACGTTAATGAAAGCCATTATAGTACGGACTCAACACGTTGA 1812 0.4084 MLPSSVSLMDDLTQPVHVPQNYLKPSMEDQLPFGAPSSQGFLQDFHQFHVNGSSSSNPVFGVQTHPNFDPFDHNVTCEYAPPDFDVYESKPFAESDGRGHAHLMDNFQHVGYSLNLPRTNQLDVMVANQTYLPFNALETKPLNFVVPDEVSCISPPNYYKRIGFNKNIRESPRTRRTFKARKKSNIVKGQWTPDEDRLLIQLVEQFGVRKWSHIAQALPGRIGKQCRERWHNHLRPDIKKDIWTEEEDKILIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGTLLQEYIKSLNLDQNPPIDYRKKSAKNTKAKTNNNGKAAAAQSQSQCPDQFCPNGQLVAKYDFNEVPDFCLDDNLFEEGCSINSLLDDMHSASTMDEKDLDEKMQCAPTMEGKQSHQRGIMQFAHVVNVDEHHEVKTELDLVEMMSHEYIKSLNLDQNPPIDYRKKSAKNTKAKTNNNGKAAAAQSQSQCPDQFCPNGQLVAKYDFNEVPDFCLDDNLFEEGCSINSLLDDMHSASTMDEKDLDEKMQCAPTMEGKQSHQRGIMQFAHVVNVDEHHEVKTELDLVEMMSHVNESHYSTDSTR 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01832 603 Gene3D - 187 240 - -
Cca11g01832 603 MobiDBLite consensus disorder prediction 461 486 - -
Cca11g01832 603 SUPERFAMILY Homeodomain-like 185 281 IPR009057 -
Cca11g01832 603 SMART sant 187 236 IPR001005 -
Cca11g01832 603 SMART sant 239 287 IPR001005 -
Cca11g01832 603 CDD SANT 191 234 IPR001005 -
Cca11g01832 603 Pfam Myb-like DNA-binding domain 243 282 IPR001005 -
Cca11g01832 603 Pfam Myb-like DNA-binding domain 188 234 IPR001005 -
Cca11g01832 603 PANTHER MYB PROTEIN-RELATED 130 314 - -
Cca11g01832 603 PANTHER BNAC03G62830D PROTEIN 130 314 - -
Cca11g01832 603 ProSiteProfiles Myb-like domain profile. 235 285 IPR001005 -
Cca11g01832 603 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 183 238 IPR017930 -
Cca11g01832 603 Gene3D - 242 303 - -
Cca11g01832 603 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 239 289 IPR017930 -
Cca11g01832 603 CDD SANT 243 285 IPR001005 -
Cca11g01832 603 ProSiteProfiles Myb-like domain profile. 183 234 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01832 Cca-Chr11 43338429 43341575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01832 28 390 MYB Transcription Factor Family AT4G18770 45.700 1.94e-97 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca11g01832 Myb_DNA-binding 4.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01832 K09422 - gmx:100816653 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00464 03 7287804 7289577 Cca11g01832 11 43338429 43341575 ECH
Cca11g01832 11 43338429 43341575 Cca11g01832 11 43338429 43341575 ECH
Cca11g01832 11 43338429 43341575 Cca03g00464 03 7287804 7289577 PCT