Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01825 ATGCTGCAATTTTTCAACATGCGTGAGCTATTATTCCTAACATTCCTGGTATCGTCGTGGTTATTAATCCCACGTGCGGATTCATCAAGGGTACACCAAACCGGTCTCACGTGCGGCTCATCGCAGACCCCCGAATCAAGCGCGTCCAAGTTCATGGCCATAATGGACACGGTGTCGTTTCGGGTGTATGACCAAGGCTGGGCAGCGCAGGCGCTGCTGGGCTCTGGGCCTCCCATGTACGCGTTGGGCCAATGCAGGCGCGACCTGAAGCCCGCGGATTGCCGCACCTGTTTCGCCGAAGCCCGACAAGTTCTATCGCACTGCGTGCCCAAGACAGGTGGCAGAATCTACCTCGACGGTTGCTTCCTCCGCTACGACAACTACTCCTTCTTTCGCGAGAGCGTCGACCCCGCTCTCGACATCAGCATTTGCCAGGCGCCGGTTCTCGGAAAAGACGGTCAGGCAAAGGTGGCGGAGGTGGTTGCCAACGTCACCAAGGCCGCGGTGGAGCGTGGATTCGCGGTGGGCGGGGGCGACGGGGTTTTCGCCTTGGCGCAGTGCTGGGCGACCCTGAATAAACCCACGTGCGAGATATGCTTGAACGAAGCCCAGAAGAAAATGCAGGAATGTGTGCCTGCTGCTGAGGGTAAGAGTCTCTTCACTGGTTGTTTTTTGAGGTATTCCAGGCGCAAATTCTACAACGACGTCGTTCCAGCACCACAAATCCAGGATTCTAAAAATCCTAAAGAAAAGCCTGGTACATGGATGATCGTTGCATGTGTATTATCAGCGGTTGTAGTGATTTTACTCATCCTCATTGCTGCATGTCTATGCTGTAAAAGACTGGCAACTCAGAGAAGAGTAAGCGACAGTTGTGGTGCGTCACCTGGCTTTGCCTTCTTTGCTGGCTCCAGTTTTAGTTACGATTTGCTTGAGAAGGCCACAAATAATTTTGATCCCGCAAACAAATTAGGGCAGGGTGGAGCTGGTTCCGTGTTCAAAGGAACCCTCAACTCAGGGAGGACCGTTGCTGTTAAACAACTGTTTTTTGATGCAAGGCAATGGACAGATGAGTTATGCAATGAGGTCACTTTAATTAATGGAATTCAGCACAAGAATGTGGTGAAACTTCTTGGGGGCTGCATTGAAGGTCCTGAAAGCCTATTGGTTTATGAATTTGTGCCCAATGGAAGTCTTGATCAAGTTCTTTTCGATAAGAACTCGGAAAATGTTCTGAGCTGGGAACAACGGTTTCAAATCATATGTGGGATAGCTGAGGGCTTAGCATACCTTCATGGCGACTCTGGATCAAAGATTATTCACAGAGACATAAAGTCCAGCAACATACTATTTGATGAGAATCTTAATCCAAAAATAGCTGATTTTGGTCTTGCTCGTTGTCTCACTGAAAACAAATCTCATCTTAGCACAGGAAATGCGGGGACACTGGAATATATGGCTCCCGAGTTTGTTCTCAAAGGTCAATTGACAGAGAAGGCAGATATCTATGCTTTTGGTGTGATAGTTGTTGAAATTGTCTGTGGTAAGAAGAACAGTGATTTCATACCGGGGTCAACTTCAGTACTCCACTGTGTCTGGAAGAATTACAAGGCTAAAACTATCACAGCATCCATTGATCCCACTTTGCATGGAAAATTTACGGTAGATGAGGCATCAAATGCACTCCAAGTTGGCCTGCTTTGTACACAATCTTCTGTTACTCTTAGACCATCCATGTCTGAGATAGTTCAGATGCTAACCAAGAAAGACTACGCTATTCCCTCCCCAAAGCAACAACCATTCCTCAATTTCAGTGGGCTAAGTGTAAATGACCGCACTATAAATTCCACAACGAGCAATCTATCCTCAAACGGGCGTGTAAGTGCAAGGTCCTCCTTCCACAGCACCACCAGTTCCCTACACCAAAGTGATGATTTAGCAGTACTATAG 1950 0.48 MLQFFNMRELLFLTFLVSSWLLIPRADSSRVHQTGLTCGSSQTPESSASKFMAIMDTVSFRVYDQGWAAQALLGSGPPMYALGQCRRDLKPADCRTCFAEARQVLSHCVPKTGGRIYLDGCFLRYDNYSFFRESVDPALDISICQAPVLGKDGQAKVAEVVANVTKAAVERGFAVGGGDGVFALAQCWATLNKPTCEICLNEAQKKMQECVPAAEGKSLFTGCFLRYSRRKFYNDVVPAPQIQDSKNPKEKPGTWMIVACVLSAVVVILLILIAACLCCKRLATQRRVSDSCGASPGFAFFAGSSFSYDLLEKATNNFDPANKLGQGGAGSVFKGTLNSGRTVAVKQLFFDARQWTDELCNEVTLINGIQHKNVVKLLGGCIEGPESLLVYEFVPNGSLDQVLFDKNSENVLSWEQRFQIICGIAEGLAYLHGDSGSKIIHRDIKSSNILFDENLNPKIADFGLARCLTENKSHLSTGNAGTLEYMAPEFVLKGQLTEKADIYAFGVIVVEIVCGKKNSDFIPGSTSVLHCVWKNYKAKTITASIDPTLHGKFTVDEASNALQVGLLCTQSSVTLRPSMSEIVQMLTKKDYAIPSPKQQPFLNFSGLSVNDRTINSTTSNLSSNGRVSARSSFHSTTSSLHQSDDLAVL 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01825 649 SMART serkin_6 318 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01825 649 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 13 649 - -
Cca11g01825 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Cca11g01825 649 Pfam Protein kinase domain 321 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01825 649 Gene3D Phosphorylase Kinase; domain 1 302 393 - -
Cca11g01825 649 ProSiteProfiles Protein kinase domain profile. 318 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01825 649 SUPERFAMILY Protein kinase-like (PK-like) 305 602 IPR011009 -
Cca11g01825 649 Gene3D Transferase(Phosphotransferase) domain 1 394 598 - -
Cca11g01825 649 CDD STKc_IRAK 324 588 - -
Cca11g01825 649 Pfam Salt stress response/antifungal 156 229 IPR002902 -
Cca11g01825 649 Pfam Salt stress response/antifungal 49 128 IPR002902 -
Cca11g01825 649 Gene3D - 36 130 IPR038408 -
Cca11g01825 649 Gene3D - 151 232 IPR038408 -
Cca11g01825 649 ProSiteProfiles Gnk2-homologous domain profile. 29 130 IPR002902 -
Cca11g01825 649 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 13 649 - -
Cca11g01825 649 ProSiteProfiles Gnk2-homologous domain profile. 135 232 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01825 Cca-Chr11 43259664 43264263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01825 12 611 Receptor kinase-like Gene Family AT1G70520 41.760 1.81e-144 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca11g01825 Pkinase 2.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01825 - - gmx:100780384 860.522
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00699 11 11860779 11865257 Cca11g01825 11 43259664 43264263 ECH
Cca11g01825 11 43259664 43264263 Cca11g01825 11 43259664 43264263 ECH